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mdf-reader

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Reads MDF YAML and returns helpful accessors

github.com/majensen/mdf-reader

majensen/mdf-reader

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# ICDC nodes and props for the file manifest # Title case names are "reserved" (meaningful to the parser) # Lower case names are labels for the entities Nodes: case: Export: - case_id file: Export: - file_name - drs_uri - file_type - file_description - file_format - file_size - md5sum - uuid - file_location study: Export: - clinical_study_designation - case_id - patient_id - patient_first_name - cohort_description - cohort_dose - cohort_id demographic: Export: - demographic_id - breed - additional_breed_detail - patient_age_at_enrollment - date_of_birth - sex - weight - neutered_indicator - diagnosis_id - disease_term - stage_of_disease - histology_cytopathology - date_of_histology_confirmation - histological_grade - best_response - pathology_report - treatment_data - follow_up_data - concurrent_disease - concurrent_disease_type sample: Export: - sample_id - sample_site - physical_sample_type - general_sample_pathology - tumor_sample_origin - summarized_sample_type - molecular_subtype - specific_sample_pathology - date_of_sample_collection - sample_chronology - necropsy_sample - tumor_grade - length_of_tumor - width_of_tumor - volume_of_tumor - percentage_tumor - sample_preservation