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lcars-dash

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/*! Copyright (c) The Cytoscape Consortium Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. */ ;(function(){ 'use strict'; // registers the extension on a cytoscape lib ref var register = function( cytoscape, cola ){ if( !cytoscape || !cola ){ return; } // can't register if cytoscape unspecified var raf = window.requestAnimationFrame || window.webkitRequestAnimationFrame || window.mozRequestAnimationFrame || window.msRequestAnimationFrame; var isString = function(o){ return typeof o === typeof ''; }; var isNumber = function(o){ return typeof o === typeof 0; }; var isObject = function(o){ return o != null && typeof o === typeof {}; }; // default layout options var defaults = { animate: true, // whether to show the layout as it's running refresh: 1, // number of ticks per frame; higher is faster but more jerky maxSimulationTime: 4000, // max length in ms to run the layout ungrabifyWhileSimulating: false, // so you can't drag nodes during layout fit: true, // on every layout reposition of nodes, fit the viewport padding: 30, // padding around the simulation boundingBox: undefined, // constrain layout bounds; { x1, y1, x2, y2 } or { x1, y1, w, h } nodeDimensionsIncludeLabels: undefined, // whether labels should be included in determining the space used by a node (default true) // layout event callbacks ready: function(){}, // on layoutready stop: function(){}, // on layoutstop // positioning options randomize: false, // use random node positions at beginning of layout avoidOverlap: true, // if true, prevents overlap of node bounding boxes handleDisconnected: true, // if true, avoids disconnected components from overlapping nodeSpacing: function( node ){ return 10; }, // extra spacing around nodes flow: undefined, // use DAG/tree flow layout if specified, e.g. { axis: 'y', minSeparation: 30 } alignment: undefined, // relative alignment constraints on nodes, e.g. function( node ){ return { x: 0, y: 1 } } // different methods of specifying edge length // each can be a constant numerical value or a function like `function( edge ){ return 2; }` edgeLength: undefined, // sets edge length directly in simulation edgeSymDiffLength: undefined, // symmetric diff edge length in simulation edgeJaccardLength: undefined, // jaccard edge length in simulation // iterations of cola algorithm; uses default values on undefined unconstrIter: undefined, // unconstrained initial layout iterations userConstIter: undefined, // initial layout iterations with user-specified constraints allConstIter: undefined, // initial layout iterations with all constraints including non-overlap // infinite layout options infinite: false // overrides all other options for a forces-all-the-time mode }; // constructor // options : object containing layout options function ColaLayout( options ){ var opts = this.options = {}; for( var i in defaults ){ opts[i] = defaults[i]; } for( var i in options ){ opts[i] = options[i]; } } // runs the layout ColaLayout.prototype.run = function(){ var layout = this; var options = this.options; layout.manuallyStopped = false; var cy = options.cy; // cy is automatically populated for us in the constructor var eles = options.eles; var nodes = eles.nodes(); var edges = eles.edges(); var ready = false; var bb = options.boundingBox || { x1: 0, y1: 0, w: cy.width(), h: cy.height() }; if( bb.x2 === undefined ){ bb.x2 = bb.x1 + bb.w; } if( bb.w === undefined ){ bb.w = bb.x2 - bb.x1; } if( bb.y2 === undefined ){ bb.y2 = bb.y1 + bb.h; } if( bb.h === undefined ){ bb.h = bb.y2 - bb.y1; } var typeoffn = typeof function(){}; var getOptVal = function( val, ele ){ if( typeof val === typeoffn ){ var fn = val; return fn.apply( ele, [ ele ] ); } else { return val; } }; var updateNodePositions = function(){ for( var i = 0; i < nodes.length; i++ ){ var node = nodes[i]; var dimensions = node.layoutDimensions( options ); var scratch = node.scratch('cola'); // update node dims if( !scratch.updatedDims ){ var padding = getOptVal( options.nodeSpacing, node ); scratch.width = dimensions.w + 2*padding; scratch.height = dimensions.h + 2*padding; } } nodes.positions(function(node, i){ // Perform 2.x and 1.x backwards compatibility check if( isNumber(node) ){ node = i; } var scratch = node.scratch().cola; var retPos; if( !node.grabbed() && !node.isParent() ){ retPos = { x: bb.x1 + scratch.x, y: bb.y1 + scratch.y }; if( !isNumber(retPos.x) || !isNumber(retPos.y) ){ retPos = undefined; } } return retPos; }); nodes.updateCompoundBounds(); // because the way this layout sets positions is buggy for some reason; ref #878 if( !ready ){ onReady(); ready = true; } if( options.fit ){ cy.fit( options.padding ); } }; var onDone = function(){ if( options.ungrabifyWhileSimulating ){ grabbableNodes.grabify(); } cy.off('destroy', destroyHandler); nodes.off('grab free position', grabHandler); nodes.off('lock unlock', lockHandler); // trigger layoutstop when the layout stops (e.g. finishes) layout.one('layoutstop', options.stop); layout.trigger({ type: 'layoutstop', layout: layout }); }; var onReady = function(){ // trigger layoutready when each node has had its position set at least once layout.one('layoutready', options.ready); layout.trigger({ type: 'layoutready', layout: layout }); }; var ticksPerFrame = options.refresh; var tickSkip = 1; // frames until a tick; used to slow down sim for debugging if( options.refresh < 0 ){ tickSkip = Math.abs( options.refresh ); ticksPerFrame = 1; } else { ticksPerFrame = Math.max( 1, ticksPerFrame ); // at least 1 } var adaptor = layout.adaptor = cola.adaptor({ trigger: function( e ){ // on sim event var TICK = cola.EventType ? cola.EventType.tick : null; var END = cola.EventType ? cola.EventType.end : null; switch( e.type ){ case 'tick': case TICK: if( options.animate ){ updateNodePositions(); } break; case 'end': case END: updateNodePositions(); if( !options.infinite ){ onDone(); } break; } }, kick: function(){ // kick off the simulation //var skip = 0; var inftick = function(){ if( layout.manuallyStopped ){ onDone(); return true; } var ret = adaptor.tick(); if( ret && options.infinite ){ // resume layout if done adaptor.resume(); // resume => new kick } return ret; // allow regular finish b/c of new kick }; var multitick = function(){ // multiple ticks in a row var ret; // skip ticks to slow down layout for debugging // var thisSkip = skip; // skip = (skip + 1) % tickSkip; // if( thisSkip !== 0 ){ // return false; // } for( var i = 0; i < ticksPerFrame && !ret; i++ ){ ret = ret || inftick(); // pick up true ret vals => sim done } return ret; }; if( options.animate ){ var frame = function(){ if( multitick() ){ return; } raf( frame ); }; raf( frame ); } else { while( !inftick() ){} } }, on: function( type, listener ){}, // dummy; not needed drag: function(){} // not needed for our case }); layout.adaptor = adaptor; // if set no grabbing during layout var grabbableNodes = nodes.filter(':grabbable'); if( options.ungrabifyWhileSimulating ){ grabbableNodes.ungrabify(); } var destroyHandler; cy.one('destroy', destroyHandler = function(e){ layout.stop(); }); // handle node dragging var grabHandler; nodes.on('grab free position', grabHandler = function(e){ var node = this; var scrCola = node.scratch().cola; var pos = node.position(); var nodeIsTarget = e.cyTarget === node || e.target === node; if( !nodeIsTarget ){ return; } switch( e.type ){ case 'grab': adaptor.dragstart( scrCola ); adaptor.resume(); break; case 'free': adaptor.dragend( scrCola ); break; case 'position': // only update when different (i.e. manual .position() call or drag) so we don't loop needlessly if( scrCola.px !== pos.x - bb.x1 || scrCola.py !== pos.y - bb.y1 ){ scrCola.px = pos.x - bb.x1; scrCola.py = pos.y - bb.y1; adaptor.resume(); } break; } }); var lockHandler; nodes.on('lock unlock', lockHandler = function(e){ var node = this; var scrCola = node.scratch().cola; scrCola.fixed = node.locked(); if( node.locked() ){ adaptor.dragstart( scrCola ); } else { adaptor.dragend( scrCola ); } }); var nonparentNodes = nodes.stdFilter(function( node ){ return !node.isParent(); }); // add nodes to cola adaptor.nodes( nonparentNodes.map(function( node, i ){ var padding = getOptVal( options.nodeSpacing, node ); var pos = node.position(); var dimensions = node.layoutDimensions( options ); var struct = node.scratch().cola = { x: options.randomize || pos.x === undefined ? Math.round( Math.random() * bb.w ) : pos.x, y: options.randomize || pos.y === undefined ? Math.round( Math.random() * bb.h ) : pos.y, width: dimensions.w + 2*padding, height: dimensions.h + 2*padding, index: i, fixed: node.locked() }; return struct; }) ); if( options.alignment ){ // then set alignment constraints var offsetsX = []; var offsetsY = []; nonparentNodes.forEach(function( node ){ var align = getOptVal( options.alignment, node ); var scrCola = node.scratch().cola; var index = scrCola.index; if( !align ){ return; } if( align.x != null ){ offsetsX.push({ node: index, offset: align.x }); } if( align.y != null ){ offsetsY.push({ node: index, offset: align.y }); } }); // add alignment constraints on nodes var constraints = []; if( offsetsX.length > 0 ){ constraints.push({ type: 'alignment', axis: 'x', offsets: offsetsX }); } if( offsetsY.length > 0 ){ constraints.push({ type: 'alignment', axis: 'y', offsets: offsetsY }); } adaptor.constraints( constraints ); } // add compound nodes to cola adaptor.groups( nodes.stdFilter(function( node ){ return node.isParent(); }).map(function( node, i ){ // add basic group incl leaf nodes var optPadding = getOptVal( options.nodeSpacing, node ); var getPadding = function(d){ return parseFloat( node.style('padding-'+d) ); }; var pleft = getPadding('left') + optPadding; var pright = getPadding('right') + optPadding; var ptop = getPadding('top') + optPadding; var pbottom = getPadding('bottom') + optPadding; node.scratch().cola = { index: i, padding: Math.max( pleft, pright, ptop, pbottom ), // leaves should only contain direct descendants (children), // not the leaves of nested compound nodes or any nodes that are compounds themselves leaves: node.children().stdFilter(function( child ){ return !child.isParent(); }).map(function( child ){ return child[0].scratch().cola.index; }), fixed: node.locked() }; return node; }).map(function( node ){ // add subgroups node.scratch().cola.groups = node.children().stdFilter(function( child ){ return child.isParent(); }).map(function( child ){ return child.scratch().cola.index; }); return node.scratch().cola; }) ); // get the edge length setting mechanism var length; var lengthFnName; if( options.edgeLength != null ){ length = options.edgeLength; lengthFnName = 'linkDistance'; } else if( options.edgeSymDiffLength != null ){ length = options.edgeSymDiffLength; lengthFnName = 'symmetricDiffLinkLengths'; } else if( options.edgeJaccardLength != null ){ length = options.edgeJaccardLength; lengthFnName = 'jaccardLinkLengths'; } else { length = 100; lengthFnName = 'linkDistance'; } var lengthGetter = function( link ){ return link.calcLength; }; // add the edges to cola adaptor.links( edges.stdFilter(function( edge ){ return !edge.source().isParent() && !edge.target().isParent(); }).map(function( edge, i ){ var c = edge.scratch().cola = { source: edge.source()[0].scratch().cola.index, target: edge.target()[0].scratch().cola.index }; if( length != null ){ c.calcLength = getOptVal( length, edge ); } return c; }) ); adaptor.size([ bb.w, bb.h ]); if( length != null ){ adaptor[ lengthFnName ]( lengthGetter ); } // set the flow of cola if( options.flow ){ var flow; var defAxis = 'y'; var defMinSep = 50; if( isString(options.flow) ){ flow = { axis: options.flow, minSeparation: defMinSep }; } else if( isNumber(options.flow) ){ flow = { axis: defAxis, minSeparation: options.flow }; } else if( isObject(options.flow) ){ flow = options.flow; flow.axis = flow.axis || defAxis; flow.minSeparation = flow.minSeparation != null ? flow.minSeparation : defMinSep; } else { // e.g. options.flow: true flow = { axis: defAxis, minSeparation: defMinSep }; } adaptor.flowLayout( flow.axis , flow.minSeparation ); } layout.trigger({ type: 'layoutstart', layout: layout }); adaptor .avoidOverlaps( options.avoidOverlap ) .handleDisconnected( options.handleDisconnected ) .start( options.unconstrIter, options.userConstIter, options.allConstIter) ; if( !options.infinite ){ setTimeout(function(){ if( !layout.manuallyStopped ){ adaptor.stop(); } }, options.maxSimulationTime); } return this; // chaining }; // called on continuous layouts to stop them before they finish ColaLayout.prototype.stop = function(){ if( this.adaptor ){ this.manuallyStopped = true; this.adaptor.stop(); } return this; // chaining }; cytoscape('layout', 'cola', ColaLayout); }; if( typeof module !== 'undefined' && module.exports ){ // expose as a commonjs module module.exports = function( cytoscape, cola ){ register( cytoscape, cola || require('webcola') ); }; } else if( typeof define !== 'undefined' && define.amd ){ // expose as an amd/requirejs module define('cytoscape-cola', function(){ return register; }); } if( typeof cytoscape !== 'undefined' && typeof cola !== 'undefined' ){ // expose to global cytoscape (i.e. window.cytoscape) register( cytoscape, cola ); } })();