ideogram
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Chromosome visualization for the web
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<title>Homology, interspecies | Ideogram</title>
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<script type="text/javascript" src="../../dist/js/ideogram.min.js"></script>
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<h1>Homology, interspecies | Ideogram</h1>
<a href="../">Overview</a> |
<a href="homology-advanced">Previous</a> |
<a href="annotations-basic">Next</a> |
<a href="https://github.com/eweitz/ideogram/blob/gh-pages/homology-interspecies.html" target="_blank">Source</a>
<p>
The location of the <a href="http://www.ncbi.nlm.nih.gov/gene/2475">MTOR</a>
gene in human and mouse is depicted below. MTOR is clinically associated
with cancer and Alzheimer's disease.
</p>
<script type="text/javascript">
function onIdeogramLoad() {
// See HomoloGene entry for MTOR at
// http://www.ncbi.nlm.nih.gov/homologene/3637
// Placements for H. sapiens and M. musculus used below.
// Placements from latest annotation release in
// Human: http://www.ncbi.nlm.nih.gov/gene/2475#genomic-context
// Mouse: http://www.ncbi.nlm.nih.gov/gene/56717#genomic-context
var chrs, chr1, chr4, syntheticRegions, humanTaxid, mouseTaxid;
humanTaxid = ideogram.getTaxid('human');
mouseTaxid = ideogram.getTaxid('mouse');
var chrs = ideogram.chromosomes,
chr1 = chrs[humanTaxid]['1'],
chr4 = chrs[mouseTaxid]['4'],
syntenicRegions = [];
range1 = {
chr: chr1,
start: 11106531,
stop: 11262557,
orientation: 'reverse'
};
range2 = {
chr: chr4,
start: 148448582,
stop: 148557685
};
syntenicRegions.push({'r1': range1, 'r2': range2});
ideogram.drawSynteny(syntenicRegions);
}
var config = {
organism: ['human', 'mouse'],
chromosomes: {
human: ['1'],
mouse: ['4']
},
chrHeight: 400,
chrMargin: 50,
fullChromosomeLabels: true,
showBandLabels: true,
perspective: 'comparative',
rotatable: false,
onLoad: onIdeogramLoad
};
var ideogram = new Ideogram(config);
</script>
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