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Chromosome visualization with D3.js
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<title>Ploidy, rearrangements | Ideogram</title>
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<h1>Ploidy, rearrangements | Ideogram</h1>
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<p>
This triploid banana genome is a hybrid of
<i>Musa acuminata</i> ("A") and <i>Musa balbisiana</i> ("B").
<br/>
Chromosomal rearrangements shown below include:
<ul>
<li>Arm gained in a copy of chromosome 1</li>
<li>Arm lost in a copy of chromosome 2</li>
</ul>
</p>
<script type="text/javascript">
var config = {
organism: 'banana',
// armColors: ['#D00', '#CCC'],
// armColors: ['#fff', '#fff'],
// armColors: ['#dea673', '#7396be'],
orientation: 'horizontal',
ploidy: 3,
ancestors: {
'A': '#dea673',
'B': '#7396be'
},
ploidyDesc: [
{'AABB': ['11', '11', '11', '02']},
{'AAB': ['01', '11', '11']},
'BAB',
{'AABB': ['11', '11', '11', '20']},
'AAB',
'BBB',
{'AAB': ['01', '11', '11']},
'AAB',
'AAB',
'AAB',
'AAB'
]
};
var ideogram = new Ideogram(config);
</script>
</body>
</html>