ideogram
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Chromosome visualization with D3.js
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<head>
<title>Homology, basic | Ideogram</title>
<style>body {font: 12px Arial; line-height: 19.6px;}</style>
<script type="text/javascript" src="../../dist/js/ideogram.min.js"></script>
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<body>
<h1>Homology, basic | Ideogram</h1>
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<p>
Pseudoautosomal regions (PAR) are the only parts of chromosomes X and Y
that typically undergo genetic recombination. PAR1 and PAR2 are depicted
below.
</p>
<script type="text/javascript">
function onIdeogramLoad() {
var chrs = ideogram.chromosomes,
chrX = chrs['9606']['X'],
chrY = chrs['9606']['Y'];
var par1X = {chr: chrX, start: 10001, stop: 2781479};
var par1Y = {chr: chrY, start: 10001, stop: 2781479};
var par2X = {chr: chrX, start: 155701383, stop: 156030895};
var par2Y = {chr: chrY, start: 56887903, stop: 57217415};
var pseudoautosomalRegions = [
{'r1': par1X, 'r2': par1Y},
{'r1': par2X, 'r2': par2Y}
];
ideogram.drawSynteny(pseudoautosomalRegions);
}
var config = {
organism: 'human',
chromosomes: ['X', 'Y'],
chrHeight: 400,
chrMargin: 200,
showBandLabels: true,
perspective: 'comparative',
rotatable: false,
onLoad: onIdeogramLoad
};
var ideogram = new Ideogram(config);
</script>
</body>
</html>