UNPKG

ideogram

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Chromosome visualization with D3.js

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/* Developed by Eric Weitz (https://github.com/eweitz) */ body { font: 12px Arial; line-height: 19.6px; } svg { padding-left: 5px; } svg.labeled { padding-left: 15px; } svg.labeledLeft { padding-left: 15px; padding-top: 15px; } text { /* Tahoma has excellent readability and space utilization at small sizes. More: http://ux.stackexchange.com/a/3334 */ font: 9px Tahoma; fill: #000; } .italic { font-style: italic; } .chromosome { cursor: pointer; } .ghost { opacity: 0.2; } .hidden { display: none; } .bandLabelStalk line { stroke: #AAA; stroke-width: 1; } .chromosomeBorder, .acen { stroke: #000; stroke-width:0.5; } .syntenyBorder { stroke:#AAA; stroke-width:1; } .brush .selection { fill: #F00; stroke: #F00; fill-opacity: .3; shape-rendering: crispEdges; } .noBands { fill: #AAA; } /* NCBI stain density colors */ .gneg {fill: #FFF} .gpos25 {fill: #BBB} .gpos33 {fill: #AAA} .gpos50 {fill: #888} .gpos66 {fill: #666} .gpos75 {fill: #444} .gpos100 {fill: #000} .acen {fill: #FDD} .stalk {fill: #CCE;} .gvar {fill: #DDF} /* Used when overlaid with annotations */ .faint .gneg {fill: #FFF} .faint .gpos25 {fill: #EEE} .faint .gpos33 {fill: #EEE} .faint .gpos50 {fill: #EEE} .faint .gpos66 {fill: #EEE} .faint .gpos75 {fill: #EEE} .faint .gpos100 {fill: #DDD} .faint .acen {fill: #FEE} .faint .stalk {fill: #EEF;} .faint .gvar {fill: #EEF}