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ibowankenobi-i-pv

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Interactive Protein Sequence VIsualization/Viewer - Interactive Circos

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(function() { var doctype = '<?xml version="1.0" standalone="no"?><!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">'; window.URL = (window.URL || window.webkitURL); var body = document.body; var prefix = { xmlns: "http://www.w3.org/2000/xmlns/", xlink: "http://www.w3.org/1999/xlink", svg: "http://www.w3.org/2000/svg" } initialize(); function initialize() { var documents = [window.document], SVGSources = []; iframes = document.querySelectorAll("iframe"), objects = document.querySelectorAll("object"); [].forEach.call(iframes, function(el) { try { if (el.contentDocument) { documents.push(el.contentDocument); } } catch(err) { console.log(err) } }); [].forEach.call(objects, function(el) { try { if (el.contentDocument) { documents.push(el.contentDocument); } } catch(err) { console.log(err) } }); documents.forEach(function(doc) { var styles = getStyles(doc); var newSources = getSources(doc, styles); // because of prototype on NYT pages for (var i = 0; i < newSources.length; i++) { SVGSources.push(newSources[i]); }; }) if (SVGSources.length > 1) { createPopover(SVGSources); } else if (SVGSources.length > 0) { download(SVGSources[0]); } else { alert("The Crowbar couldn’t find any SVG nodes."); } } function createPopover(sources) { cleanup(); sources.forEach(function(s1) { sources.forEach(function(s2) { if (s1 !== s2) { if ((Math.abs(s1.top - s2.top) < 38) && (Math.abs(s1.left - s2.left) < 38)) { s2.top += 38; s2.left += 38; } } }) }); var buttonsContainer = document.createElement("div"); body.appendChild(buttonsContainer); buttonsContainer.setAttribute("class", "svg-crowbar"); buttonsContainer.style["z-index"] = 1e7; buttonsContainer.style["position"] = "absolute"; buttonsContainer.style["top"] = 0; buttonsContainer.style["left"] = 0; var background = document.createElement("div"); body.appendChild(background); background.setAttribute("class", "svg-crowbar"); background.style["background"] = "rgba(255, 255, 255, 0.7)"; background.style["position"] = "fixed"; background.style["left"] = 0; background.style["top"] = 0; background.style["width"] = "100%"; background.style["height"] = "100%"; sources.forEach(function(d, i) { var buttonWrapper = document.createElement("div"); buttonsContainer.appendChild(buttonWrapper); buttonWrapper.setAttribute("class", "svg-crowbar"); buttonWrapper.style["position"] = "absolute"; buttonWrapper.style["top"] = (d.top + document.body.scrollTop) + "px"; buttonWrapper.style["left"] = (document.body.scrollLeft + d.left) + "px"; buttonWrapper.style["padding"] = "4px"; buttonWrapper.style["border-radius"] = "3px"; buttonWrapper.style["color"] = "white"; buttonWrapper.style["text-align"] = "center"; buttonWrapper.style["font-family"] = "'Helvetica Neue'"; buttonWrapper.style["background"] = "rgba(0, 0, 0, 0.8)"; buttonWrapper.style["box-shadow"] = "0px 4px 18px rgba(0, 0, 0, 0.4)"; buttonWrapper.style["cursor"] = "move"; buttonWrapper.textContent = "SVG #" + i + ": " + (d.id ? "#" + d.id : "") + (d.class ? "." + d.class : ""); var button = document.createElement("button"); buttonWrapper.appendChild(button); button.setAttribute("data-source-id", i) button.style["width"] = "150px"; button.style["font-size"] = "12px"; button.style["line-height"] = "1.4em"; button.style["margin"] = "5px 0 0 0"; button.textContent = "Download"; button.onclick = function(el) { // console.log(el, d, i, sources) download(d); }; }); } function cleanup() { var crowbarElements = document.querySelectorAll(".svg-crowbar"); [].forEach.call(crowbarElements, function(el) { el.parentNode.removeChild(el); }); } function getSources(doc, styles) { var svgInfo = [], svgs = doc.querySelectorAll("svg"); styles = (styles === undefined) ? "" : styles; [].forEach.call(svgs, function (svg) { svg.setAttribute("version", "1.1"); var defsEl = document.createElement("defs"); svg.insertBefore(defsEl, svg.firstChild); //TODO .insert("defs", ":first-child") // defsEl.setAttribute("class", "svg-crowbar"); var styleEl = document.createElement("style") defsEl.appendChild(styleEl); styleEl.setAttribute("type", "text/css"); // removing attributes so they aren't doubled up svg.removeAttribute("xmlns"); svg.removeAttribute("xlink"); // These are needed for the svg if (!svg.hasAttributeNS(prefix.xmlns, "xmlns")) { svg.setAttributeNS(prefix.xmlns, "xmlns", prefix.svg); } if (!svg.hasAttributeNS(prefix.xmlns, "xmlns:xlink")) { svg.setAttributeNS(prefix.xmlns, "xmlns:xlink", prefix.xlink); } var source = (new XMLSerializer()).serializeToString(svg).replace('</style>', '<![CDATA[' + styles + ']]></style>'); var rect = svg.getBoundingClientRect(); svgInfo.push({ top: rect.top, left: rect.left, width: rect.width, height: rect.height, class: svg.getAttribute("class"), id: svg.getAttribute("id"), childElementCount: svg.childElementCount, source: [doctype + source] }); }); return svgInfo; } function download(source) { var filename = "untitled"; if (source.id) { filename = source.id; } else if (source.class) { filename = source.class; } else if (window.document.title) { filename = window.document.title.replace(/[^a-z0-9]/gi, '-').toLowerCase(); } var url = window.URL.createObjectURL(new Blob(source.source, { "type" : "text\/xml" })); var a = document.createElement("a"); body.appendChild(a); a.setAttribute("class", "svg-crowbar"); a.setAttribute("download", filename + ".svg"); a.setAttribute("href", url); a.style["display"] = "none"; a.click(); setTimeout(function() { window.URL.revokeObjectURL(url); }, 10); } function getStyles(doc) { var styles = "", styleSheets = doc.styleSheets; if (styleSheets) { for (var i = 0; i < styleSheets.length; i++) { processStyleSheet(styleSheets[i]); } } function processStyleSheet(ss) { if (ss.cssRules) { for (var i = 0; i < ss.cssRules.length; i++) { var rule = ss.cssRules[i]; if (rule.type === 3) { // Import Rule processStyleSheet(rule.styleSheet); } else { // hack for illustrator crashing on descendent selectors if (rule.selectorText) { if (rule.selectorText.indexOf(">") === -1) { styles += "\n" + rule.cssText; } } } } } } return styles; } })();