ibowankenobi-i-pv/i-pv/circos-p/templates/circos_template.conf

Interactive Protein Sequence VIsualization/Viewer - Interactive Circos

# 1.2 IDEOGRAM LABELS, TICKS, AND MODULARIZING CONFIGURATION
#
# In this tutorial, I will add tick marks, tick labels and ideogram
# labels to the previous image. This will require the use of a <ticks>
# block and expanding the <ideogram> block. 
#
# To make the configuration more modular, the tick and ideogram
# parameters will be stored in different files and imported using the
# <<include>> directive.
#

karyotype = ../datatracks/karyotype.txt

# The chromosomes_unit value is used as a unit (suffix "u") to shorten
# values in other parts of the configuration file. Some parameters,
# such as ideogram and tick spacing, accept "u" suffixes, so instead of
#
# spacing = 10000000
#
# you can write
#
# spacing = 10u
#
# See ticks.conf for examples.

chromosomes_display_default = yes
#chromosomes = hs1:110-122;hs2:95-100;hs3:43-102;hs4:40-102;hs5:83-133;hs6:25-30;hs7:97-122;hs10:70-81;hs12:109-114;hs15:40-87;hs17:57-66;/pt/;-pt19;-pt29;-pt54
#chromosomes_breaks = -hs3:56-92;-hs15:48-69;-hs4:49-89;-hs5:97-127;-hs7:104-115
chromosomes_units = 1000000
#chromosomes_scale = /pt/= 0.17rn
#chromosomes_reverse = Coelecanth

<<include ideogram.conf>>

<<include ticks.conf>>

<<include ../datatracks/plot.conf>>

<image>
<<include image_template.conf>>                
</image>

<<include etc/colors_fonts_patterns.conf>> 

<colors>
<<include custom_preset.conf>>
</colors>

<<include etc/housekeeping.conf>> 

#background = white