ibowankenobi-i-pv
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Interactive Protein Sequence VIsualization/Viewer - Interactive Circos
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show_ticks = yes
show_tick_labels = yes
show_grid = yes
<ticks>
tick_label_font = light
radius = dims(ideogram,radius_outer) + 180p
label_offset = 5p
label_size = 16p
multiplier = 1e-6
color = black
thickness = 1p
# 25 Mb ticks, all chromosomes, with labels
<tick>
spacing = 25u
size = 12p
show_label = yes
format = %d
</tick>
# 5 Mb ticks, all chromosomes, with labels
# labels must be separated by at least 1px, which
# avoids overlap on human chrs
<tick>
label_separation = 1p
spacing = 5u
size = 7p
show_label = yes
format = %d
</tick>
# 5 Mb ticks with grid on rn1 and mm1, drawn only
# for their grid (note size=0p)
<tick>
chromosomes_display_default = no
chromosomes = rn1;mm1
spacing = 5u
size = 0p
force_display = yes
grid_start = 0.45r
grid_end = dims(ideogram,radius_outer) + 180p
grid_color = grey
grid_thickness = 1p
grid = yes
</tick>
# 20% relative ticks on human chromosomes
<tick>
chromosomes = -rn1;-mm1
radius = 0.95r
spacing_type = relative
rspacing = 0.20
size = 6p
show_label = yes
label_relative = yes
rmultiplier = 100
format = %d
suffix = %
skip_last_label= yes
grid_start = 0.885r
grid_end = 0.95r
grid_color = grey
grid_thickness = 1p
grid = yes
</tick>
# relative ticks at start and end of human chromosomes
# with grid
<tick>
spacing_type = relative
rspacing = 1
size = 6p
grid_start = 0.45r
grid_end = dims(ideogram,radius_outer) + 180p
grid_color = grey
grid_thickness = 1p
grid = yes
</tick>
<tick>
chromosomes = -rn1;-mm1
radius = 0.95r
spacing_type = relative
rspacing = 0.10
size = 3p
show_label = no
grid_start = 0.885r
grid_end = 0.95r
grid_color = lgrey
grid_thickness = 1p
grid = yes
</tick>
# 25% relative ticks on human chromosomes
<tick>
chromosomes = -rn1;-mm1
radius = 0.82r
spacing_type = relative
rspacing = 0.25
size = 6p
show_label = yes
label_relative = yes
rmultiplier = 100
format = %d
skip_last_label= yes
grid_start = 0.755r
grid_end = 0.82r
grid_color = grey
grid_thickness = 1p
grid = yes
</tick>
</ticks>