ibowankenobi-i-pv/circos/example/README

Interactive Protein Sequence VIsualization/Viewer - Interactive Circos

EXAMPLE

This is an example that demonstrates many features of Circos,
including some advanced such as track automation. Use this example to
verify that your installation is working and as an introduction to the
configuration file syntax.

*** Don't use this configuration file as a template for
*** your projects if you are new to Circos. Instead, use the 
*** Quick Start tutorial and refer to the Best Practices
***
*** http://www.circos.ca/tutorials/lessons/quick_start

Use the online tutorials (see below) to learn about configuration syntax.

To create the image, execute the 'run' script (UNIX)

> ./run

The image takes ~60 seconds to generate on a 3.33GHz GHz Intel Xeon
X5680 machine. Most of it spent arranging labels in the gene name text
track. See run.out for what to expect.

For Windows users, please see 

http://www.circos.ca/tutorials/lessons/configuration/unix_vs_windows/

to learn how to run Circos. To run the example on Windows

> perl ..\bin\circos -conf etc/circos.conf -debug_group summary,timer


TUTORIALS

Tutorials that explain each feature are available for download separately

  http://www.circos.ca/software/download/tutorials/

 available online at

  http://www.circos.ca/documentation/tutorials