hyphy-scope/dist/utils/fubar-utils.d.ts

Reusable Svelte components for HyPhy analysis visualization

/**
 * FUBAR (Fast Unconstrained Bayesian AppRoximation) utility functions
 */
export interface FubarResults {
    MLE: {
        headers: Array<[string, string]>;
        content: {
            [key: string]: number[][];
        };
    };
    grid: number[][];
    posterior: number[][][][];
    'data partitions': {
        [key: string]: {
            coverage: number[][];
        };
    };
    input: {
        trees: {
            [key: string]: string;
        } | string[] | string;
        'number of sites': number;
    };
    fits?: any;
    'branch attributes'?: any;
}
export interface FubarSiteData {
    Site: number;
    Partition: number;
    α: number;
    β: number;
    'α-β': number;
    'Prob[α>β]': number;
    'Prob[α<β]': number;
}
export interface FubarSummary {
    positiveSites: number;
    negativeSites: number;
    totalSites: number;
}
/**
 * Get summary statistics for FUBAR results
 */
export declare function getFubarSummary(data: FubarResults, posteriorProbability?: number): FubarSummary;
/**
 * Get site-by-site data for FUBAR results
 */
export declare function getFubarSiteData(data: FubarResults): FubarSiteData[];
/**
 * Get partition column mapping
 */
export declare function getPartitionColumn(data: FubarResults): number[];
/**
 * Extract tree newick string from various input formats
 */
export declare function getTreeNewick(data: FubarResults): string | null;
/**
 * Get grid data for a specific site
 */
export declare function getGridDataForSite(data: FubarResults, site: number): number[][];