higlass

{ "$schema": "http://json-schema.org/draft-07/schema#", "$id": "https://higlass.io/#viewconf", "title": "HiGlass viewconf", "type": "object", "additionalProperties": false, "required": [], "properties": { "editable": { "type": "boolean", "default": true }, "viewEditable": { "type": "boolean", "default": true }, "tracksEditable": { "type": "boolean", "default": true }, "zoomFixed": { "type": "boolean" }, "compactLayout": { "type": "boolean" }, "exportViewUrl": { "type": "string" }, "trackSourceServers": { "type": "array", "items": { "type": "string" }, "minLength": 1 }, "zoomLocks": { "$ref": "#/definitions/locks/zoomLocks" }, "locationLocks": { "$ref": "#/definitions/locks/locationLocks" }, "valueScaleLocks": { "$ref": "#/definitions/locks/valueScaleLocks" }, "views": { "type": "array", "items": { "$ref": "#/definitions/view" }, "minLength": 1 }, "chromInfoPath": { "type": "string" } }, "definitions": { "data": { "type": "object", "properties": { "url": { "type": "string" }, "server": { "type": "string" }, "filetype": { "type": "string" }, "type": { "type": "string" }, "tilesetInfo": { "type": "object" }, "children": { "type": "array" }, "tiles": { "type": "object" } } }, "locks": { "slug": { "type": "string" }, "locksByViewUid": { "type": "object", "additionalProperties": false, "patternProperties": { ".": { "$ref": "#/definitions/locks/slug" } } }, "axisSpecificLocks": { "additionalProperties": false, "properties": { "axis": { "enum": ["x", "y"], "type": "string" }, "lock": { "type": "string" } }, "required": ["lock", "axis"], "type": "object" }, "locationLocksByViewUid": { "type": "object", "additionalProperties": false, "patternProperties": { ".": { "anyOf": [ { "type": "string" }, { "additionalProperties": false, "properties": { "x": { "$ref": "#/definitions/locks/axisSpecificLocks" }, "y": { "$ref": "#/definitions/locks/axisSpecificLocks" } }, "type": "object" } ] } } }, "zoomLocks": { "type": "object", "additionalProperties": false, "required": [], "properties": { "locksByViewUid": { "$ref": "#/definitions/locks/locksByViewUid" }, "locksDict": { "type": "object", "additionalProperties": false, "patternProperties": { ".": { "type": "object", "additionalProperties": false, "properties": { "uid": { "$ref": "#/definitions/locks/slug" } }, "patternProperties": { "^(?!uid).": { "type": "array", "minLength": 3, "maxLength": 3, "items": { "type": "number" } } } } } } } }, "locationLocks": { "type": "object", "additionalProperties": false, "required": [], "properties": { "locksByViewUid": { "$ref": "#/definitions/locks/locationLocksByViewUid" }, "locksDict": { "type": "object", "additionalProperties": false, "patternProperties": { ".": { "type": "object", "additionalProperties": false, "properties": { "uid": { "$ref": "#/definitions/locks/slug" } }, "patternProperties": { "^(?!uid).": { "type": "array", "minLength": 3, "maxLength": 3, "items": { "type": "number" } } } } } } } }, "valueScaleLocks": { "type": "object", "additionalProperties": false, "required": ["locksByViewUid", "locksDict"], "properties": { "locksByViewUid": { "$ref": "#/definitions/locks/locksByViewUid" }, "locksDict": { "type": "object", "additionalProperties": false, "patternProperties": { ".": { "type": "object", "additionalProperties": false, "properties": { "uid": { "$ref": "#/definitions/locks/slug" }, "ignoreOffScreenValues": { "type": "boolean" } }, "patternProperties": { "^(?!(uid|ignoreOffScreenValues)).": { "type": "object", "additionalProperties": false, "required": ["view", "track"], "properties": { "view": { "type": "string" }, "track": { "$ref": "#/definitions/locks/slug" } } } } } } } } } }, "view": { "type": "object", "additionalProperties": false, "required": ["tracks", "layout"], "properties": { "autocompleteSource": { "type": "string" }, "chromInfoPath": { "type": "string" }, "genomePositionSearchBox": { "$ref": "#/definitions/viewProperties/genomePositionSearchBox" }, "genomePositionSearchBoxVisible": { "type": "boolean" }, "initialXDomain": { "$ref": "#/definitions/viewProperties/domain" }, "initialYDomain": { "$ref": "#/definitions/viewProperties/domain" }, "layout": { "$ref": "#/definitions/viewProperties/layout" }, "overlays": { "type": "array", "items": { "$ref": "#/definitions/viewProperties/overlay" } }, "selectionView": { "type": "boolean" }, "tracks": { "$ref": "#/definitions/viewProperties/tracks_object" }, "uid": { "type": "string" }, "zoomFixed": { "type": "boolean" }, "zoomLimits": { "type": "array", "minLength": 2, "maxLength": 2, "default": [1, null] } } }, "viewProperties": { "genomePositionSearchBox": { "type": "object", "title": "The Genome Position Search Box Schema", "required": ["chromInfoServer", "chromInfoId"], "properties": { "autocompleteServer": { "type": "string", "title": "The Autocomplete Server URL", "default": "", "examples": ["//higlass.io/api/v1"], "pattern": "^(.*)$" }, "autocompleteId": { "type": "string", "title": "The Autocomplete ID", "default": "", "examples": ["OHJakQICQD6gTD7skx4EWA"], "pattern": "^(.*)$" }, "chromInfoServer": { "type": "string", "title": "The Chrominfo Server URL", "default": "", "examples": ["//higlass.io/api/v1"], "pattern": "^(.*)$" }, "chromInfoId": { "type": "string", "title": "The Chromosome Info ID", "default": "", "examples": ["hg19"], "pattern": "^(.*)$" }, "visible": { "type": "boolean", "title": "The Visible Schema", "default": false } } }, "overlay": { "type": "object", "additionalProperties": false, "properties": { "chromInfoPath": { "type": "string" }, "includes": { "type": "array" }, "options": { "type": "object", "properties": { "extent": { "type": "array" }, "minWidth": { "type": "number" }, "fill": { "type": "string" }, "fillOpacity": { "type": "number" }, "stroke": { "type": "string" }, "strokeOpacity": { "type": "number" }, "strokeWidth": { "type": "number" }, "strokePos": { "type": ["string", "array"] }, "outline": { "type": "string" }, "outlineOpacity": { "type": "number" }, "outlineWidth": { "type": "number" }, "outlinePos": { "type": ["string", "array"] } } }, "type": { "type": "string" }, "uid": { "type": "string" } } }, "layout": { "type": "object", "additionalProperties": false, "required": ["w", "h", "x", "y"], "properties": { "x": { "type": "integer", "title": "The X Position", "default": 0 }, "y": { "type": "integer", "title": "The Y Position", "default": 0 }, "w": { "type": "integer", "title": "Width", "default": 12 }, "h": { "type": "integer", "title": "Height", "default": 12 }, "moved": { "type": "boolean" }, "static": { "type": "boolean" } } }, "tracks_object": { "type": "object", "additionalProperties": false, "properties": { "left": { "$ref": "#/definitions/viewProperties/tracks_array" }, "right": { "$ref": "#/definitions/viewProperties/tracks_array" }, "top": { "$ref": "#/definitions/viewProperties/tracks_array" }, "bottom": { "$ref": "#/definitions/viewProperties/tracks_array" }, "center": { "$ref": "#/definitions/viewProperties/tracks_array" }, "whole": { "$ref": "#/definitions/viewProperties/tracks_array" }, "gallery": { "$ref": "#/definitions/viewProperties/tracks_array" } } }, "tracks_array": { "type": "array", "items": { "oneOf": [ { "$ref": "#/definitions/tracks/enum_track" }, { "$ref": "#/definitions/tracks/combined_track" }, { "$ref": "#/definitions/tracks/heatmap_track" }, { "$ref": "#/definitions/tracks/independent_viewport_projection_track" } ] } }, "domain": { "type": "array", "items": { "type": "number" }, "maxItems": 2, "minItems": 2 } }, "tracks": { "heatmap_track": { "type": "object", "additionalProperties": false, "required": [], "properties": { "uid": { "type": "string" }, "type": { "const": "heatmap" }, "data": { "$ref": "#/definitions/data" }, "height": { "type": "number" }, "options": { "type": "object" }, "position": { "type": "string" }, "server": { "type": "string" }, "tilesetUid": { "type": "string" }, "width": { "type": "number" }, "transforms": { "type": "array" } } }, "combined_track": { "type": "object", "additionalProperties": false, "required": ["contents"], "properties": { "contents": { "$ref": "#/definitions/viewProperties/tracks_array" }, "height": { "type": "number" }, "options": {}, "position": { "type": "string" }, "type": { "const": "combined" }, "uid": { "type": "string" }, "width": { "type": "number" } } }, "enum_track": { "type": "object", "additionalProperties": false, "required": ["type"], "properties": { "server": { "type": "string" }, "tilesetUid": { "type": "string" }, "data": { "$ref": "#/definitions/data" }, "uid": { "type": "string" }, "type": { "enum": [ "multivec", "1d-heatmap", "line", "point", "bar", "divergent-bar", "stacked-interval", "gene-annotations", "linear-2d-rectangle-domains", "chromosome-labels", "linear-heatmap", "1d-value-interval", "2d-annotations", "2d-chromosome-annotations", "2d-chromosome-grid", "2d-chromosome-labels", "2d-rectangle-domains", "2d-tiles", "arrowhead-domains", "bedlike", "cross-rule", "dummy", "horizontal-1d-annotations", "horizontal-1d-heatmap", "horizontal-1d-tiles", "horizontal-1d-value-interval", "horizontal-2d-rectangle-domains", "horizontal-bar", "horizontal-chromosome-grid", "horizontal-chromosome-labels", "horizontal-divergent-bar", "horizontal-gene-annotations", "horizontal-heatmap", "horizontal-line", "horizontal-multivec", "horizontal-point", "horizontal-rule", "horizontal-vector-heatmap", "image-tiles", "left-axis", "left-stacked-interval", "mapbox-tiles", "osm-2d-tile-ids", "osm-tiles", "raster-tiles", "simple-svg", "square-markers", "top-axis", "top-stacked-interval", "vertical-1d-annotations", "vertical-1d-heatmap", "vertical-1d-tiles", "vertical-1d-value-interval", "vertical-2d-rectangle-domains", "vertical-bar", "vertical-bedlike", "vertical-chromosome-grid", "vertical-chromosome-labels", "vertical-gene-annotations", "vertical-heatmap", "vertical-line", "vertical-multivec", "vertical-point", "vertical-rule", "vertical-vector-heatmap", "viewport-projection-center", "viewport-projection-horizontal", "viewport-projection-vertical" ] }, "chromInfoPath": { "type": "string" }, "fromViewUid": { "type": "string" }, "height": { "type": "number" }, "options": { "type": "object" }, "width": { "type": "number" }, "x": { "type": "number" }, "y": { "type": "number" } } }, "independent_viewport_projection_track": { "type": "object", "additionalProperties": false, "properties": { "uid": { "type": "string" }, "type": { "enum": [ "viewport-projection-horizontal", "viewport-projection-vertical", "viewport-projection-center" ] }, "fromViewUid": { "type": "null" }, "projectionXDomain": { "$ref": "#/definitions/viewProperties/domain" }, "projectionYDomain": { "$ref": "#/definitions/viewProperties/domain" }, "options": { "type": "object" }, "transforms": { "type": "array" }, "width": { "type": "number" }, "x": { "type": "number" }, "y": { "type": "number" } } } } } }