higlass
Version:
HiGlass Hi-C / genomic / large data viewer
240 lines (229 loc) • 6.96 kB
HTML
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width,initial-scale=1">
<title>HiGlass</title>
<style type="text/css">
.canvasjs-chart-credit {
display:none;
}
</style>
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/latest/css/bootstrap.min.css">
<link rel="stylesheet" href="styles/page.css">
<link rel="stylesheet" href="../hglib.css">
<script src="https://cdnjs.cloudflare.com/ajax/libs/react/15.5.4/react.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/react/15.5.4/react-dom.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/pixi.js/4.5.2/pixi.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/react-bootstrap/0.31.0/react-bootstrap.min.js"></script>
</head>
<body >
<div style="height: 50px" />
<div style="margin: auto; width: 100%;">
<div
id="development-demo"
style="position: absolute; left: 1rem; top: 1rem; bottom: 1rem; right: 1rem">
</div>
</div>
</body>
<script src='../hglib.js'>
</script>
<script>
var testViewConfig =
{
"editable": true,
"zoomFixed": false,
"trackSourceServers": [
"http://higlass.io/api/v1",
"http://localhost:8000/api/v1",
],
"exportViewUrl": "http://localhost:8000/api/v1/viewconfs/",
"views": [
{
"uid": "aa",
"initialXDomain": [
-128227010.6076158,
3227095876.810823
],
"initialYDomain": [
-679063376.6830564,
3737688490.1136293
],
"autocompleteSource": "http://higlass.io/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&",
"genomePositionSearchBoxVisible": false,
"chromInfoPath": "//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv",
"tracks": {
"top": [
{
"chromInfoPath": "//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv",
"type": "horizontal-chromosome-labels",
"position": "top",
"name": "Chromosome Labels (hg19)",
"height": 30,
"uid": "I1QUF22JQJuJ38j9PS4iqw",
"options": {},
"width": 667
}
],
"left": [
{
"chromInfoPath": "//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv",
"type": "vertical-chromosome-labels",
"position": "left",
"name": "Chromosome Labels (hg19)",
"width": 30,
"uid": "a-mFiHnBQ8uuI6UG3USWVA",
"options": {},
"height": 828
}
],
"center": [
{
"uid": "c1",
"type": "combined",
"height": 828,
"contents": [
{
"data": {
"type": "divided",
'children': [
{
"server": "http://higlass.io/api/v1",
"tilesetUid": "CQMd6V_cRw6iCI_-Unl3PQ",
},
{
"server": "http://higlass.io/api/v1",
"tilesetUid": "ZCvntCKST0KUvQPGcCbJGA",
}
]
},
"type": "heatmap",
"position": "center",
"options": {
"colorRange": [
"#FFFFFF",
"#F8E71C",
"#F5A623",
"#D0021B"
],
"colorbarPosition": "topRight",
"colorbarLabelsPosition": "outside",
"maxZoom": null,
"labelPosition": "bottomLeft",
"name": "Rao et al. (2014) GM12878 MboI (allreps) 1kb",
"trackBorderWidth": 0,
"trackBorderColor": "black",
"heatmapValueScaling": "log",
"scaleStartPercent": "0.00000",
"scaleEndPercent": "1.00000"
},
"uid": "heatmap1",
"name": "Rao et al. (2014) GM12878 MboI (allreps) 1kb",
"transforms": [
{
"name": "ICE",
"value": "weight"
}
],
"width": 667,
"height": 828
},
{
"type": "2d-chromosome-grid",
"local": true,
"orientation": "2d",
"name": "Chromosome Grid (hg19)",
"chromInfoPath": "//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv",
"thumbnail": null,
"server": "",
"tilesetUid": "TIlwFtqxTX-ndtM7Y9k1bw",
"uid": "LUVqXXu2QYiO8XURIwyUyA",
"options": {
"lineStrokeWidth": 1,
"lineStrokeColor": "grey"
},
"position": "center",
"width": 667,
"height": 828
}
],
"position": "center",
"options": {},
"width": 667
}
],
"right": [],
"bottom": []
},
"layout": {
"w": 12,
"h": 12,
"x": 0,
"y": 0,
"i": "aa",
"moved": false,
"static": false
}
}
],
"zoomLocks": {
"locksByViewUid": {},
"locksDict": {}
},
"locationLocks": {
"locksByViewUid": {},
"locksDict": {}
},
"valueScaleLocks": {
"locksByViewUid": {},
"locksDict": {}
}
}
;
window.higlassApi;
hglib.createHgComponent(
document.getElementById('development-demo'),
testViewConfig,
{ bounded: true },
function (api) {
window.hgApi = api;
}
);
window.hgApi.on('view', function (viewConfig) {
console.log('View Config changed');
});
// setTimeout(function () {
// // Go to PTEN
// window.hgApi.goTo(
// testViewConfig.views[0].uid,
// 'chr10',
// 89596071,
// 89758810,
// 'chr10',
// 89596071,
// 89758810,
// true,
// 10000
// );
// }, 3000);
// setTimeout(function () {
// // Go to Chr1 without animation
// window.hgApi.goTo(
// testViewConfig.views[0].uid,
// 'chr1',
// 0,
// 89758810,
// 'chr1',
// 0,
// 89758810
// );
// }, 11000);
</script>
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','https://www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-77756807-1', 'auto');
ga('send', 'pageview');
</script>
</html>