higlass
Version:
HiGlass Hi-C / genomic / large data viewer
317 lines (309 loc) • 9.45 kB
HTML
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width,initial-scale=1">
<title>HiGlass</title>
<style type="text/css">
.canvasjs-chart-credit {
display:none;
}
</style>
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css">
<link rel="stylesheet" href="../styles/page.css">
<link rel="stylesheet" href="../hglib.css">
<script src="https://cdnjs.cloudflare.com/ajax/libs/react/15.5.4/react.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/react/15.5.4/react-dom.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/pixi.js/4.5.2/pixi.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/react-bootstrap/0.31.0/react-bootstrap.min.js"></script>
</head>
<body >
Here's some text
<div style=""></div>
<div style="margin: auto">
<div
style="position: absolute; left: 1rem; top: 1rem; bottom: 1rem; right: 1rem"
id="development-demo">
</div>
</div>
And some other text
<div style="height: 1500px"> </div>
</body>
<script src='../hglib.js'>
</script>
<script>
var testViewConfig =
{
"editable": true,
"zoomFixed": false,
"trackSourceServers": [
"http://higlass.io/api/v1"
],
"exportViewUrl": "/api/v1/viewconfs",
"views": [
{
"uid": "aa",
"initialXDomain": [
18517530.78355204,
244002902.8391003
],
"autocompleteSource": "/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&",
"genomePositionSearchBox": {
"autocompleteServer": "http://higlass.io/api/v1",
"autocompleteId": "OHJakQICQD6gTD7skx4EWA",
"chromInfoServer": "http://higlass.io/api/v1",
"chromInfoId": "hg19",
"visible": true
},
"chromInfoPath": "//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv",
"tracks": {
"top": [
{
"name": "hg38 gene annotations",
"server": "http://test1.resgen.io/api/v1",
"tilesetUid": "GLCo9Dr7QTWvi4jkOU7zLg",
"uid": "VXy9EBNUTiShGsZO3ZRT7g",
"type": "horizontal-gene-annotations",
"height": 55,
"position": "top",
"options": {
"labelColor": "black",
"labelPosition": "hidden",
"plusStrandColor": "blue",
"minusStrandColor": "red",
"trackBorderWidth": 0,
"trackBorderColor": "black",
"showMousePosition": false,
"name": "hg38 gene annotations"
},
"width": 649
},
{
"name": "XXXX",
"server": "http://test1.resgen.io/api/v1",
"tilesetUid": "DjWCpDyOQH-nLYDwkWDqRQ",
"uid": "I2j5S3qmQ1KnVa9WZavXvA",
"type": "horizontal-chromosome-labels",
"height": 30,
"position": "top",
"options": {
"showMousePosition": false,
"mousePositionColor": "#999999"
},
"width": 649
}
],
"left": [],
"center": [
{
"name": "90.out.gz 1000bp bins",
"server": "http://test1.resgen.io/api/v1",
"tilesetUid": "ZFodkRDDT2iiai48WaTJ1g",
"uid": "D04g4CK_TU6lAIyYy4TT0Q",
"type": "heatmap",
"height": 30,
"position": "center",
"options": {
"labelPosition": "bottomRight",
"colorRange": [
"rgba(0,0,128,1.0)",
"rgba(0,129,256,1.0)",
"rgba(125,256,122,1.0)",
"rgba(256,148,0,1.0)",
"rgba(128,0,0,1.0)"
],
"maxZoom": null,
"colorbarPosition": "topRight",
"trackBorderWidth": 0,
"trackBorderColor": "black",
"heatmapValueScaling": "log",
"showMousePosition": false,
"name": "out.mcool",
"scaleStartPercent": "0.00000",
"scaleEndPercent": "0.00560"
},
"transforms": []
}
],
"bottom": [],
"right": []
},
"layout": {
"w": 6,
"h": 12,
"x": 0,
"y": 0,
"i": "aa",
"moved": false,
"static": false
},
"initialYDomain": [
-4216269.634685274,
264343008.51541048
]
},
{
"uid": "Nnjcq7aqS12fVCJpJuTzQg",
"initialXDomain": [
18517530.783531368,
244002902.83912092
],
"autocompleteSource": "/api/v1/suggest/?d=OHJakQICQD6gTD7skx4EWA&",
"genomePositionSearchBox": {
"autocompleteServer": "http://higlass.io/api/v1",
"autocompleteId": "OHJakQICQD6gTD7skx4EWA",
"chromInfoServer": "http://higlass.io/api/v1",
"chromInfoId": "hg19",
"visible": true
},
"chromInfoPath": "//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv",
"tracks": {
"top": [
{
"name": "hg38 gene annotations",
"server": "http://test1.resgen.io/api/v1",
"tilesetUid": "GLCo9Dr7QTWvi4jkOU7zLg",
"uid": "VXy9EBNUTiShGsZO3ZRT7g",
"type": "horizontal-gene-annotations",
"height": 55,
"position": "top",
"options": {
"labelColor": "black",
"labelPosition": "hidden",
"plusStrandColor": "blue",
"minusStrandColor": "red",
"trackBorderWidth": 0,
"trackBorderColor": "black",
"showMousePosition": false
},
"width": 649
},
{
"name": "XXXX",
"server": "http://test1.resgen.io/api/v1",
"tilesetUid": "DjWCpDyOQH-nLYDwkWDqRQ",
"uid": "I2j5S3qmQ1KnVa9WZavXvA",
"type": "horizontal-chromosome-labels",
"height": 30,
"position": "top",
"options": {
"showMousePosition": false,
"mousePositionColor": "#999999"
},
"width": 649
}
],
"left": [],
"center": [
{
"name": "hg38.hg38.10000.32.10M.0.0.mcool",
"server": "http://test1.resgen.io/api/v1",
"tilesetUid": "RGfj99ZPR4eLJM4wVkBmWw",
"uid": "UGnV_Y_0RP2nG4A9I-_pvA",
"type": "heatmap",
"height": 30,
"position": "center",
"options": {
"labelPosition": "bottomRight",
"colorRange": [
"white",
"rgba(245,166,35,1.0)",
"rgba(208,2,27,1.0)",
"black"
],
"maxZoom": null,
"colorbarPosition": "topRight",
"trackBorderWidth": 0,
"trackBorderColor": "black",
"heatmapValueScaling": "log",
"showMousePosition": false,
"name": "hg38.hg38.10000.32.10M.0.0.mcool",
"scaleStartPercent": "0.00000",
"scaleEndPercent": "1.00000"
},
"transforms": []
}
],
"bottom": [],
"right": []
},
"layout": {
"w": 6,
"h": 12,
"x": 6,
"y": 0,
"i": "Nnjcq7aqS12fVCJpJuTzQg",
"moved": false,
"static": false
},
"initialYDomain": [
-4216269.634709157,
264343008.51543587
]
}
],
"zoomLocks": {
"locksByViewUid": {
"aa": "L8zmqneISYS7X-oxfI_svQ",
"Nnjcq7aqS12fVCJpJuTzQg": "L8zmqneISYS7X-oxfI_svQ"
},
"locksDict": {
"L8zmqneISYS7X-oxfI_svQ": {
"aa": [
1549999999.9999998,
1549999999.9999986,
4360865.7464591265
],
"Nnjcq7aqS12fVCJpJuTzQg": [
1549999999.9999998,
1549999999.9999993,
4360865.746459961
],
"uid": "L8zmqneISYS7X-oxfI_svQ"
}
}
},
"locationLocks": {
"locksByViewUid": {
"aa": "MKcZM09uRJaMgMuKrj-Tmg",
"Nnjcq7aqS12fVCJpJuTzQg": "MKcZM09uRJaMgMuKrj-Tmg"
},
"locksDict": {
"MKcZM09uRJaMgMuKrj-Tmg": {
"aa": [
1549999999.9999998,
1549999999.9999986,
4360865.7464591265
],
"Nnjcq7aqS12fVCJpJuTzQg": [
1549999999.9999998,
1549999999.9999993,
4360865.746459961
],
"uid": "MKcZM09uRJaMgMuKrj-Tmg"
}
}
},
"valueScaleLocks": {
"locksByViewUid": {},
"locksDict": {}
}
}
window.higlassApi;
hglib.createHgComponent(
document.getElementById('development-demo'),
testViewConfig,
{ bounded: true },
function (api) {
window.hgApi = api;
}
);
</script>
<script>
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})(window,document,'script','https://www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-77756807-1', 'auto');
ga('send', 'pageview');
</script>
</html>