grnsight/web-client/public/js/constants.js

Web app and service for visualizing models of gene regulatory networks

export const HOST_SITE = "https://dondi.github.io";

export const FILE_NAME = "#fileName";

export const GREY_EDGES_DASHED_MENU = "#grey-edges-dashed-menu";
export const GREY_EDGES_DASHED_SIDEBAR = "#dashedGrayLineButton";

export const CREATE_NETWORK_CLASS = ".create-network";
export const CREATE_NETWORK_MODAL = "#generateNetworkModal";

export const UNWEIGHTED_DEMO_ID   = ".unweighted";
export const UNWEIGHTED_DEMO_PATH = "demo/unweighted";
export const UNWEIGHTED_DEMO_NAME = "Demo #1: Unweighted GRN (15 genes, 28 edges)";
export const WEIGHTED_DEMO_ID     = ".weighted";
export const WEIGHTED_DEMO_PATH   = "demo/weighted";
export const WEIGHTED_DEMO_NAME   = "Demo #2: Weighted GRN (15 genes, 28 edges, Dahlquist Lab unpublished data)";
export const SCHADE_INPUT_ID      = ".schadeInput";
export const SCHADE_INPUT_PATH    = "demo/schadeInput";
export const SCHADE_INPUT_NAME    = "Demo #3: Unweighted GRN (21 genes, 31 edges)";
export const SCHADE_OUTPUT_ID     = ".schadeOutput";
export const SCHADE_OUTPUT_PATH = "demo/schadeOutput";
export const SCHADE_OUTPUT_NAME   = "Demo #4: Weighted GRN (21 genes, 31 edges, Schade et al. 2004 data)";

export const PPI_DEMO_ID = ".ppi";
export const PPI_DEMO_PATH = "demo/ppi";
export const PPI_DEMO_NAME = "Demo #5: PPI (18 proteins, 81 edges)";

export const EXPORT_TO_EXCEL                        = "#exportAsExcelWkbk";
export const EXPORT_TO_UNWEIGHTED_SIF               = "#exportAsUnweightedSif";
export const EXPORT_TO_WEIGHTED_SIF                 = "#exportAsWeightedSif";
export const EXPORT_TO_UNWEIGHTED_GML               = "#exportAsUnweightedGraphMl";
export const EXPORT_TO_UNWEIGHTED_GML_MENU          = "#unweightedGraphmlContainer";
export const EXPORT_TO_WEIGHTED_GML                 = "#exportAsWeightedGraphMl";
export const EXPORT_TO_PNG                          = "#exportAsPng";
export const EXPORT_TO_SVG                          = "#exportAsSvg";
export const EXPORT_TO_PDF                          = "#exportAsPdf";
export const EXPORT_WEIGHTED_CLASS                  = ".weighted.export";
export const EXPRESSION_SOURCE                      = "#expressionSource";

export const NETWORK_MODE_GRN           = "#network-mode-grn-menu";
export const NETWORK_MODE_PROTEIN_PHYS  = "#network-mode-protein-protein-physical-interaction-menu";
export const NETWORK_MODE_DROPDOWN      = "#networkModeDropdown";
export const NETWORK_MODE_CLASS         = ".network-mode";


export const DEMO_INFORMATION = [
    [ WEIGHTED_DEMO_ID,   WEIGHTED_DEMO_PATH,   WEIGHTED_DEMO_NAME   ],
    [ UNWEIGHTED_DEMO_ID, UNWEIGHTED_DEMO_PATH, UNWEIGHTED_DEMO_NAME ],
    [ SCHADE_INPUT_ID,    SCHADE_INPUT_PATH,    SCHADE_INPUT_NAME    ],
    [ SCHADE_OUTPUT_ID,   SCHADE_OUTPUT_PATH,   SCHADE_OUTPUT_NAME   ],
    [ PPI_DEMO_ID,        PPI_DEMO_PATH,        PPI_DEMO_NAME        ]
];

export const MIN_EDGE_WEIGHT_NORMALIZATION      = 0.0001;
export const MAX_EDGE_WEIGHT_NORMALIZATION      = 1000;

export const DEFAULT_ZOOM_VALUE                 = 100;
export const BOUNDARY_MARGIN                    = 5;

export const GREY_EDGE_THRESHOLD_MENU           = "#gray-edge-threshold-menu";
export const GREY_EDGE_THRESHOLD_SLIDER_SIDEBAR = "#grayThresholdInput";
export const GREY_EDGE_THRESHOLD_TEXT_SIDEBAR   = "#grayThresholdValue";

export const SET_NORMALIZATION_MENU             = "#edge-weight-normalization-factor-menu";
export const SET_NORMALIZATION_SIDEBAR          = "#normalization-button";
export const SET_NORMALIZATION_SIDEBAR_VALUE    = "#normalization-max";
export const RESET_NORMALIZATION_MENU           = "#reset-normalization-factor-menu";
export const RESET_NORMALIZATION_SIDEBAR        = "#resetNormalizationButton";

export const WEIGHTS_SHOW_MOUSE_OVER_MENU       = "#weightsMouseOverMenu";
export const WEIGHTS_SHOW_ALWAYS_MENU           = "#weightsAlwaysMenu";
export const WEIGHTS_HIDE_MENU                  = "#weightsNeverMenu";
export const WEIGHTS_SHOW_MOUSE_OVER_SIDE       = "#weightsMouseOverSide";
export const WEIGHTS_SHOW_ALWAYS_SIDE           = "#weightsAlwaysSide";
export const WEIGHTS_HIDE_SIDE                  = "#weightsNeverSide";
export const WEIGHTS_SHOW_MOUSE_OVER_CLASS      = ".weightsMouseOver";
export const WEIGHTS_SHOW_ALWAYS_CLASS          = ".weightsAlways";
export const WEIGHTS_HIDE_CLASS                 = ".weightsNever";

export const SHOW_WEIGHTS_MOUSEOVER             = "showWeightsMouseover";
export const SHOW_ALL_WEIGHTS                   = "showAllWeights";
export const HIDE_ALL_WEIGHTS                   = "hideAllWeights";

export const COLOR_EDGES                        = ".colorEdges";
export const ACTIVE_COLOR_OPTION                = "active";
export const COLOR_EDGES_MENU                   = "#colorEdges";
export const COLOR_EDGES_SIDEBAR                = "#colorEdgesSidebar";

export const GRAVITY_LENGTH_WITHOUT_ZERO = 3;
export const LOCK_SLIDERS_CLASS          = ".lockSliders";
export const LOCK_SLIDERS_BUTTON         = "#lockSlidersButton";
export const LOCK_SLIDERS_MENU           = "#lockSlidersMenu";
export const RESET_SLIDERS_CLASS         = ".resetSliders";
export const RESET_SLIDERS_SIDEBAR       = "#resetSlidersButton";
export const RESET_SLIDERS_MENU          = "#resetSlidersMenu";
export const UNDO_SLIDERS_RESET_CLASS    = ".undoSliderReset";
export const UNDO_SLIDERS_RESET_ID       = "#undoReset";
export const UNDO_SLIDERS_RESET_MENU     = "#undoResetMenu";
export const UNDO_SLIDERS_RESET_SIDEBAR  = "#undoResetButton";

export const LINK_DIST_CLASS            = "#link-distance";
export const LINK_DIST_SLIDER_SIDEBAR   = "#linkDistInput";
export const LINK_DIST_VALUE            = "#linkDistVal";
export const LINK_DIST_MENU             = "#link-distance-menu";
export const LINK_DIST_DEFAULT_VALUE    = 500;
export const CHARGE_CLASS               = "#charge";
export const CHARGE_SLIDER_SIDEBAR      = "#chargeInput";
export const CHARGE_VALUE               = "#chargeVal";
export const CHARGE_MENU                = "#charge-menu";
export const CHARGE_DEFAULT_VALUE       = -50;

export const GRID_LAYOUT                = "GRID_LAYOUT";
export const FORCE_GRAPH                = "FORCE_GRAPH";
export const FORCE_GRAPH_BUTTON         = "#forceGraphButton";
export const GRID_LAYOUT_BUTTON         = "#gridLayoutButton";
export const FORCE_GRAPH_MENU          = "#forceGraph";
export const GRID_LAYOUT_MENU          = "#gridLayout";

export const MINIMUM_MAX_LOG_FOLD_CHANGE                = 0;
export const MAXIMUM_MAX_LOG_FOLD_CHANGE                = 100;
export const DEFAULT_MAX_LOG_FOLD_CHANGE                = 3;
export const MAX_NUM_CHARACTERS_DROPDOWN                = 24;
export const LAYOUT_SIDEBAR_PANEL                       = "#layoutSidebarPanel";
export const EDGE_WEIGHT_MENU_CLASS                     = ".weightedGraphOptionsMenu";
export const EDGE_WEIGHT_SIDEBAR                        = ".edge-weight-sidebar";
export const EDGE_WEIGHT_SIDEBAR_HEADER_LINK            = "#edgeWeightHeaderLink";
export const EXPRESSION_DB_MENU                         = ".data-sidebar";
export const EXPRESSION_DB_MENU_HEADER_LINK             = "#dataSidebarLink";
export const EXPRESSION_DB_SIDEBAR_PANEL                = "#dataSidebarPanel";
export const EXPRESSION_DB_LOADER                       = ".expression-db-loader";
export const EXPRESSION_DB_LOADER_TEXT                  = ".expression-db-loader-text";
export const DATA_SET_SELECT                            = "#data-set-select";
export const NODE_COLORING_MENU                         = ".node-coloring";
export const NODE_COLORING_MENU_CLASS                   = ".node-coloring-menu";
export const NODE_COLORING_NAVBAR_OPTIONS               = "#node-coloring-navbar-options";
export const NODE_COLORING_SIDEBAR_PANEL                = "#nodeColoringSidebarPanel";
export const NODE_COLORING_SIDEBAR_HEADER_LINK          = "#nodeColoringHeaderLink";
export const NODE_COLORING_SIDEBAR_BODY                 = ".nodeColoringSidebarBody";
export const DATA_SIDEBAR_BODY                          = ".dataSidebarBody";
export const NODE_COLORING_SIDEBAR_HEADER               = "#sidebarPanelHeader";
export const NODE_COLORING_TOGGLE_SIDEBAR               = "#nodeColoringToggleSidebar";
export const AVG_REPLICATE_VALS_BOTTOM_SIDEBAR          = "#averageDataBottom";
export const AVG_REPLICATE_VALS_TOP_SIDEBAR             = "#averageDataTop";
export const AVG_REPLICATE_VALS_TOP_MENU                = "#averageDataTopMenu";
export const AVG_REPLICATE_VALS_BOTTOM_MENU             = "#averageDataBottomMenu";
export const NODE_COLORING_TOGGLE_MENU                  = "#node-coloring-toggle-menu";
export const NODE_COLORING_TOGGLE_CLASS                 = ".nodeColoringToggle";
export const LOG_FOLD_CHANGE_MAX_VALUE_CLASS            = ".logFoldChangeMaxValue";
export const LOG_FOLD_CHANGE_MAX_VALUE_HEADER           = "#logFoldChangeMaxValue";
export const LOG_FOLD_CHANGE_MAX_VALUE_SIDEBAR_INPUT    = "#log-fold-change-max-value-sidebar";
export const LOG_FOLD_CHANGE_MAX_VALUE_SIDEBAR_BUTTON   = "#log-fold-change-button";
export const LOG_FOLD_CHANGE_MAX_VALUE_MENU             = "#log-fold-change-max-value-menu";
export const ENDS_IN_EXPRESSION_REGEXP                  = /expression$/;
export const TOP_DATASET_SELECTION_MENU                 = "#topDatasetDropdownMenu";
export const TOP_DATASET_SELECTION_SIDEBAR              = "#dataset-top";
export const BOTTOM_DATASET_SELECTION_MENU              = "#bottomDatasetDropdownMenu";
export const BOTTOM_DATASET_SELECTION_SIDEBAR           = "#dataset-bottom";

export const SPECIES_IDENTIFIED_NAME                    = "#speciesName";
export const SPECIES_DISPLAY                            = "#speciesDropdown";
export const SPECIES_BUTTON_YEAST                       = "#Saccharomyces_cerevisiae";
export const SPECIES_BUTTON_HUMAN                       = "#Homo_sapiens";
export const SPECIES_BUTTON_FLY                         = "#Drosophila_melanogaster";
export const SPECIES_BUTTON_NEMATODE                    = "#Caenorhabditis_elegans";
export const SPECIES_BUTTON_MOUSE                       = "#Mus_musculus";
export const SPECIES_BUTTON_CRESS                       = "#Arabidopsis_thaliana";

export const NODE_COLORING_USING_EXPRESSION_DATA        = "#expressionDB";

export const ZOOM_CONTROL                               = ".zoom";
export const ZOOM_DISPLAY_MAXIMUM_SELECTOR              = ".maximum-zoom-display";
export const ZOOM_DISPLAY_MAXIMUM_VALUE                 = 200;
export const ZOOM_DISPLAY_MINIMUM_SELECTOR              = ".minimum-zoom-display";
export const ZOOM_DISPLAY_MINIMUM_VALUE                 = 25;
export const ZOOM_DISPLAY_MIDDLE                        = 100;
export const ZOOM_ADAPTIVE_MAX_SCALE                    = 4;
export const ZOOM_SLIDER                                = "#zoomSlider";
export const ZOOM_INPUT                                 = "#zoomInput";
export const ZOOM_PERCENT                               = "#zoomPercent";

export const VIEWPORT_INIT                              = "containerInit";
export const VIEWPORT_FIT                               = "containerFit";
export const VIEWPORT_S                               = "containerS";
export const VIEWPORT_M                               = "containerM";
export const VIEWPORT_L                               = "containerL";

export const VIEWPORT_SIZE_S_DROPDOWN                   = "#viewport-size-s";
export const VIEWPORT_SIZE_M_DROPDOWN                   = "#viewport-size-m";
export const VIEWPORT_SIZE_L_DROPDOWN                   = "#viewport-size-l";
export const VIEWPORT_SIZE_FIT_DROPDOWN                 = "#viewport-size-fit";
export const VIEWPORT_SIZE_S_SIDEBAR                    = "#boundBoxS";
export const VIEWPORT_SIZE_M_SIDEBAR                    = "#boundBoxM";
export const VIEWPORT_SIZE_L_SIDEBAR                    = "#boundBoxL";
export const VIEWPORT_SIZE_FIT_SIDEBAR                  = "#boundBoxFit";
export const VIEWPORT_OPTION_CLASS                      = ".viewportOption";
export const VIEWPORT_OPTION_CLASS_SIDEBAR              = ".boundBoxSize";

export const NETWORK_PPI_MODE                           = "protein-protein-physical-interaction";
export const NETWORK_GRN_MODE                           = "grn";