grnsight
Version:
Web app and service for visualizing models of gene regulatory networks
1,673 lines (1,668 loc) • 223 kB
JavaScript
const constants = require("./constants");
/* eslint-disable camelcase */
var helpers = require(__dirname + "/helpers");
var processDemo = function (path, res, app, workbook) {
helpers.attachCorsHeader(res, app);
helpers.attachFileHeaders(res, path);
return workbook.errors.length === 0
? // If all looks well, return the workbook with an all clear
res.json(workbook)
: // If all does not look well, return the workbook with an error 400
res.status(400).json(workbook);
};
var demoWorkbook1 = function (path, res, app) {
let workbook1 = {
genes: [
{name: "ACE2"},
{name: "ASH1"},
{name: "CIN5"},
{name: "GCR2"},
{name: "GLN3"},
{name: "HAP4"},
{name: "HMO1"},
{name: "MSN2"},
{name: "SFP1"},
{name: "STB5"},
{name: "SWI4"},
{name: "SWI5"},
{name: "YHP1"},
{name: "YOX1"},
{name: "ZAP1"}
],
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negativeWeights: [],
sheetType: "unweighted",
network: {
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{name: "CIN5"},
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{name: "GLN3"},
{name: "HAP4"},
{name: "HMO1"},
{name: "MSN2"},
{name: "SFP1"},
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},
meta: {
data: {
alpha: 0.02,
kk_max: 1,
MaxIter: 100000000,
TolFun: 0.000001,
MaxFunEval: 100000000,
TolX: 0.000001,
production_function: "Sigmoid",
L_curve: 0,
estimate_params: 1,
make_graphs: 1,
fix_P: 0,
fix_b: 0,
expression_timepoints: [15, 30, 60],
Strain: ["wt", "dcin5", "dgln3", "dhap4", "dhmo1", "dzap1"],
simulation_timepoints: [0, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60],
species: "Saccharomyces cerevisiae",
taxon_id: 559292,
workbookType: constants.NETWORK_GRN_MODE
}
},
twoColumnSheets: {
production_rates: {
data: {
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CIN5: 0.2009,
GCR2: 0.1925,
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STB5: 0.14,
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YOX1: 0.7296,
ZAP1: 0.1042
}
},
degradation_rates: {
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ZAP1: 0.0521
}
},
threshold_b: {
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GLN3: 0,
HAP4: 0,
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MSN2: 0,
SFP1: 0,
STB5: 0,
SWI4: 0,
SWI5: 0,
YHP1: 0,
YOX1: 0,
ZAP1: 0
}
}
},
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warnings: [],
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