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genomefeatures

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A D3 based genome feature rendering

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export declare const CONSEQUENCES_ENUM: { readonly transcript_ablation: { readonly impact: "HIGH"; readonly color: "#ff0000"; }; readonly splice_acceptor_variant: { readonly impact: "HIGH"; readonly color: "#ff581a"; }; readonly splice_donor_variant: { readonly impact: "HIGH"; readonly color: "#ff581a"; }; readonly stop_gained: { readonly impact: "HIGH"; readonly color: "#ff0000"; }; readonly frameshift_variant: { readonly impact: "HIGH"; readonly color: "#9400D3"; }; readonly stop_lost: { readonly impact: "HIGH"; readonly color: "#ff0000"; }; readonly start_lost: { readonly impact: "HIGH"; readonly color: "#ffd700"; }; readonly transcript_amplification: { readonly impact: "HIGH"; readonly color: "#ff69b4"; }; readonly inframe_insertion: { readonly impact: "MODERATE"; readonly color: "#ff69b4"; }; readonly inframe_deletion: { readonly impact: "MODERATE"; readonly color: "#ff69b4"; }; readonly missense_variant: { readonly impact: "MODERATE"; readonly color: "#ffd700"; }; readonly protein_altering_variant: { readonly impact: "MODERATE"; readonly color: "#ff0080"; }; readonly splice_region_variant: { readonly impact: "LOW"; readonly color: "#ff7f50"; }; readonly incomplete_terminal_codon_variant: { readonly impact: "LOW"; readonly color: "#ff00ff"; }; readonly start_retained_variant: { readonly impact: "LOW"; readonly color: "#76ee00"; }; readonly stop_retained_variant: { readonly impact: "LOW"; readonly color: "#76ee00"; }; readonly synonymous_variant: { readonly impact: "LOW"; readonly color: "#76ee00"; }; readonly coding_sequence_variant: { readonly impact: "MODIFIER"; readonly color: "#458b00"; }; readonly mature_miRNA_variant: { readonly impact: "MODIFIER"; readonly color: "#458b00"; }; readonly five_prime_UTR_variant: { readonly impact: "MODIFIER"; readonly color: "#7ac5cd"; }; readonly three_prime_UTR_variant: { readonly impact: "MODIFIER"; readonly color: "#7ac5cd"; }; readonly non_coding_transcript_exon_variant: { readonly impact: "MODIFIER"; readonly color: "#32cd32"; }; readonly intron_variant: { readonly impact: "MODIFIER"; readonly color: "#02599c"; }; readonly NMD_transcript_variant: { readonly impact: "MODIFIER"; readonly color: "#ff4500"; }; readonly non_coding_transcript_variant: { readonly impact: "MODIFIER"; readonly color: "#32cd32"; }; readonly upstream_gene_variant: { readonly impact: "MODIFIER"; readonly color: "#a2b5cd"; }; readonly downstream_gene_variant: { readonly impact: "MODIFIER"; readonly color: "#a2b5cd"; }; readonly TFBS_ablation: { readonly impact: "MODIFIER"; readonly color: "#a52a2a"; }; readonly TFBS_amplification: { readonly impact: "MODIFIER"; readonly color: "#a52a2a"; }; readonly TF_binding_site_variant: { readonly impact: "MODIFIER"; readonly color: "#a52a2a"; }; readonly regulatory_region_ablation: { readonly impact: "MODERATE"; readonly color: "#a52a2a"; }; readonly regulatory_region_amplification: { readonly impact: "MODIFIER"; readonly color: "#a52a2a"; }; readonly feature_elongation: { readonly impact: "MODIFIER"; readonly color: "#7f7f7f"; }; readonly regulatory_region_variant: { readonly impact: "MODIFIER"; readonly color: "#a52a2a"; }; readonly feature_truncation: { readonly impact: "MODIFIER"; readonly color: "#7f7f7f"; }; readonly intergenic_variant: { readonly impact: "MODIFIER"; readonly color: "#636363"; }; }; export declare function getColorForConsequence(consequence: string): "black" | "#ff0000" | "#ff581a" | "#9400D3" | "#ffd700" | "#ff69b4" | "#ff0080" | "#ff7f50" | "#ff00ff" | "#76ee00" | "#458b00" | "#7ac5cd" | "#32cd32" | "#02599c" | "#ff4500" | "#a2b5cd" | "#a52a2a" | "#7f7f7f" | "#636363" | "gray" | "#f0f";