generic-sequence-panel/dist/assembleBundle.js

read feature and sequence data and produce highlighted fasta

"use strict";
var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
    return new (P || (P = Promise))(function (resolve, reject) {
        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
        step((generator = generator.apply(thisArg, _arguments || [])).next());
    });
};
Object.defineProperty(exports, "__esModule", { value: true });
exports.assembleBundle = assembleBundle;
const accessFasta_1 = require("./accessFasta");
function assembleBundle(_a) {
    return __awaiter(this, arguments, void 0, function* ({ fastaurl, transcript, refseq, upDownBp, }) {
        return {
            feature: transcript.toJSON(),
            sequence: yield (0, accessFasta_1.accessFasta)(refseq, transcript.get("start"), transcript.get("end"), fastaurl, upDownBp),
        };
    });
}