fhirtypes
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TypeScript
import { IBackboneElement, IElement } from '../base';
import { ICodeableConcept, IReference } from '../datatypes';
import { OrientationTypeType, StrandTypeType } from '../types';
/**
* @name IMolecularSequenceReferenceSeq
* @description Raw data describing a biological sequence.
* @see <a href="https://hl7.org/fhir/R4/molecularsequence-definitions.html#MolecularSequence.referenceSeq">IMolecularSequenceReferenceSeq</a>
* @version R4
* @extends {IBackboneElement}
* @author Claudia Alarcón Lazo
*/
export interface IMolecularSequenceReferenceSeq extends IBackboneElement {
/**
* @description Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).
*/
chromosome?: ICodeableConcept;
/**
* @description The Genome Build used for reference, following GRCh build versions e.g. \u0027GRCh 37\u0027. Version number must be included if a versioned release of a primary build was used.
*/
genomeBuild?: string;
/**
* @description Extensions for genomeBuild
*/
_genomeBuild?: IElement;
/**
* @description A relative reference to a DNA strand based on gene orientation. The strand that contains the open reading frame of the gene is the \"sense\" strand, and the opposite complementary strand is the \"antisense\" strand.
* @description sense | antisense
* @see <a href="https://hl7.org/fhir/R4/valueset-orientation-type.html">OrientationType</a>
*/
orientation?: OrientationTypeType;
/**
* @description Extensions for orientation
*/
_orientation?: IElement;
/**
* @description Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.
*/
referenceSeqId?: ICodeableConcept;
/**
* @description A pointer to another MolecularSequence entity as reference sequence.
*/
referenceSeqPointer?: IReference;
/**
* @description A string like \"ACGT\".
*/
referenceSeqString?: string;
/**
* @description Extensions for referenceSeqString
*/
_referenceSeqString?: IElement;
/**
* @description An absolute reference to a strand. The Watson strand is the strand whose 5\u0027-end is on the short arm of the chromosome, and the Crick strand as the one whose 5\u0027-end is on the long arm.
*/
strand?: StrandTypeType;
/**
* @description Extensions for strand
*/
_strand?: IElement;
/**
* @description Start position of the window on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
*/
windowStart?: number;
/**
* @description Extensions for windowStart
*/
_windowStart?: IElement;
/**
* @description End position of the window on the reference sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
*/
windowEnd?: number;
/**
* @description Extensions for windowEnd
*/
_windowEnd?: IElement;
}