fhir-snapshot-generator/dist/index.js

Generate snapshots for FHIR Profiles

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i.realpath.native==="function"){t.realpath.native=r(i.realpath.native)}else{process.emitWarning("fs.realpath.native is not a function. Is fs being monkey-patched?","Warning","fs-extra-WARN0003")}},136:(e,t,n)=>{e.exports={...n(506),...n(796),...n(882),...n(779),...n(471),...n(89),...n(76),...n(229),...n(881),...n(205)}},471:(e,t,n)=>{const r=n(77).fromPromise;const i=n(239);i.outputJson=r(n(753));i.outputJsonSync=n(425);i.outputJSON=i.outputJson;i.outputJSONSync=i.outputJsonSync;i.writeJSON=i.writeJson;i.writeJSONSync=i.writeJsonSync;i.readJSON=i.readJson;i.readJSONSync=i.readJsonSync;e.exports=i},239:(e,t,n)=>{const r=n(64);e.exports={readJson:r.readFile,readJsonSync:r.readFileSync,writeJson:r.writeFile,writeJsonSync:r.writeFileSync}},425:(e,t,n)=>{const{stringify:r}=n(449);const{outputFileSync:i}=n(229);function outputJsonSync(e,t,n){const o=r(t,n);i(e,o,n)}e.exports=outputJsonSync},753:(e,t,n)=>{const{stringify:r}=n(449);const{outputFile:i}=n(229);async function outputJson(e,t,n={}){const o=r(t,n);await i(e,o,n)}e.exports=outputJson},89:(e,t,n)=>{const r=n(77).fromPromise;const{makeDir:i,makeDirSync:o}=n(625);const 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childExists=(e,t,n)=>elementExists(e,`${t}.${n}`);const ensureChild=async(e,t,n,r,i,o)=>{const s=e.filter((e=>e.id===t||e.id.startsWith(`${t}.`)));if(s.length===0){throw new Error(`Parent element '${t}' not found in the working snapshot array`)}let c=toTree(s);if(isNodeSliceable(c)){c=c.children[0]}const a=c.children.length>0;if(!a){c=await expandNode(c,r);e=injectElementBlock(e,t,fromTree(c))}const[f,u]=n.split(":");const l=c.children.find((e=>e.id.endsWith(`.${f}`)));if(!l){const r=findMonopolyShortcutTarget(t,f,c.children);if(r){const n=`${t}.${r.rewrittenSegment}`;const i=e.find((e=>e.id===n));const s=i?.path??n;o.set(`${t}.${f}`,{id:n,path:s});const c={id:n,path:s,type:[{code:r.type}]};e=applySingleDiff(e,c);return e}throw new Error(`Element '${n}' is illegal under '${t}'.`)}if(!u)return e;if(!isNodeSliceable(l)){const t=`${l.id}:${u}`;o.set(t,{id:l.id,path:l.path});return e}const h=l.children.find((e=>e.sliceName===u));if(h){return e}if(!h){if(f.endsWith("[x]")&&l.children[0].definition?.type?.length===1){const t=l.children[0].definition.type[0].code;const n=`${f.slice(0,-3)}${initCap(t)}`;if(u===n){const t=`${l.id}:${u}`;const n=l.path;o.set(t,{id:l.id,path:n});return e}}const t=l.children[0];const n=`${t.id}:${u}`;const r=rewriteNodePaths(t,n,t.id);r.nodeType="slice";delete r.definition?.slicing;delete r.definition?.mustSupport;r.sliceName=u;if(r.definition){r.definition.sliceName=u}l.children.push(r);e=injectElementBlock(e,l.id,fromTree(l))}return e};const ensureBranch=async(e,t,n,r,i)=>{const o=t.split(".");const s=o[0];let c=e;if(e[0].id!==s){throw new Error(`Root element '${s}' not found in the working snapshot array`)}if(s===t){return c}let a=s;for(let e=1;e<o.length;e++){const t=o[e];const s=i.get(a);if(s){a=s.id}c=await ensureChild(c,a,t,n,r,i);a=`${a}.${t}`}return c};const toNodeType=e=>{if(e.id.endsWith("[x]")){return"poly"}if(e.sliceName){if(e.slicing)return"resliced";return"slice"}if(e.base?.max&&(e.base.max==="*"||parseInt(e.base.max)>1)){return"array"}return"element"};const injectElementBlock=(e,t,n)=>{const r=e.findIndex((e=>e.id===t));if(r===-1)throw new Error(`Element with id "${t}" not found`);const i=e.slice(0,r);const o=e.slice(r+1).filter((e=>!e.id.startsWith(`${t}.`)&&!e.id.startsWith(`${t}:`)));const s=[...i,...n,...o];return s};const mergeElement=(e,t)=>{if(t.id!==e.id){throw new Error(`Element ID mismatch. Tried to apply "${t.id}" onto "${e.id}".`)}const n={...e};for(const r of Object.keys(t)){if(["constraint","condition","mapping"].includes(r)){const i=e[r]||[],o=t[r]||[];if(r==="constraint"){n.constraint=[...i,...o]}else if(r==="condition"){const e=Array.from(new Set([...i,...o]));n.condition=e}else{const e=new Set;const serialize=e=>JSON.stringify(Object.entries(e).sort());const t=[...i,...o];n.mapping=t.filter((t=>{const n=serialize(t);return e.has(n)?false:e.add(n)}))}}else if(r!=="id"&&r!=="path"){if(t[r]!==undefined){n[r]=t[r]}}}return n};const elementExists_elementExists=(e,t)=>e.some((e=>e.id===t));const rewriteElementPaths=(e,t,n)=>{const r=n.endsWith(".")?n:n+".";const i=t.endsWith(".")?t:t+".";const removeSlices=e=>{const t=e.split(".");const n=t.map((e=>{const t=e.indexOf(":");return t!==-1?e.slice(0,t):e}));return n.join(".")};const replaceId=e=>e===n?t:e.startsWith(r)?i+e.slice(r.length):e;const replacePath=e=>{const t=removeSlices(i);const n=removeSlices(r);return e===n?t:e.startsWith(n)?t+e.slice(n.length):e};return e.map((e=>({...e,id:replaceId(e.id),path:replacePath(e.path)})))};const o=["definition","comment","requirements","meaningWhenMissing"];const s=["http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm","http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm-no-warnings","http://hl7.org/fhir/StructureDefinition/structuredefinition-hierarchy","http://hl7.org/fhir/StructureDefinition/structuredefinition-interface","http://hl7.org/fhir/StructureDefinition/structuredefinition-normative-version","http://hl7.org/fhir/StructureDefinition/structuredefinition-applicable-version","http://hl7.org/fhir/StructureDefinition/structuredefinition-category","http://hl7.org/fhir/StructureDefinition/structuredefinition-codegen-super","http://hl7.org/fhir/StructureDefinition/structuredefinition-security-category","http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status","http://hl7.org/fhir/StructureDefinition/structuredefinition-summary","http://hl7.org/fhir/StructureDefinition/structuredefinition-wg","http://hl7.org/fhir/StructureDefinition/replaces","http://hl7.org/fhir/StructureDefinition/resource-approvalDate","http://hl7.org/fhir/StructureDefinition/resource-effectivePeriod","http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate"];const replaceRelativeLinks=e=>e.replace(/\[([^\]]+)\]\((?!https?:\/\/)([^)]+)\)/g,((e,t,n)=>`[${t}](http://hl7.org/fhir/${n})`));const filterExtensions=e=>{const t=e.filter((e=>!s.includes(e.url)));return t.length>0?t:undefined};const addSourceToConstraints=(e,t)=>e.map((e=>({source:t,...e})));const migrateElements=(e,t)=>e.map(((e,n)=>{const r={...e};if(n===0&&e.extension){const t=filterExtensions(e.extension);if(t){r.extension=t}else{delete r.extension}}if(t.startsWith("http://hl7.org/fhir")){for(const t of o){const n=e[t];if(typeof n==="string"){r[t]=replaceRelativeLinks(n)}}}if(e.constraint){r.constraint=addSourceToConstraints(e.constraint,t)}return r}));const findMonopolyShortcutTarget=(e,t,n)=>{const r=`${e}.`;const i=n.filter((t=>t.id.startsWith(r)&&t.id!==e&&t.id.endsWith("[x]")));for(const e of i){const n=e.id.slice(r.length);const i=n.slice(0,-3);for(const n of e?.children[0]?.definition?.type??[]){const e=i+initCap(n.code);if(e===t){return{rewrittenSegment:`${i}[x]`,type:n.code}}}}return null};const expandNode=async(e,t)=>{if(isNodeSliceable(e)){throw new Error(`Node '${e.id}' is sliceable. Expand node must be called on a specific slice, headslice or a non-sliceable node.`)}if(e.children.length>0)return e;if(!e.definition){throw new Error(`Node '${e.id}' has no ElementDefinition. Cannot expand.`)}const n=e.definition;if((!n.type||n.type.length===0)&&!n.contentReference){throw new Error(`Node '${e.id}' has no type or contentReference defined. Cannot expand.`)}let r=[];if(n.contentReference){r=await t.getContentReference(n.contentReference);if(!r||r.length===0){throw new Error(`Snapshot for contentReference '${n.contentReference}' is empty or missing.`)}delete n.contentReference}else if(n.type&&n.type.length>1){r=await t.getBaseType("Element");if(!r||r.length===0){throw new Error("Snapshot for base type 'Element' is empty or missing.")}}else if(n.type&&n.type.length===1){const i=n.type[0];if(i.profile&&i.profile.length===1){const e=i.profile[0];r=await t.getByUrl(e);if(!r||r.length===0){throw new Error(`Snapshot for type '${e}' is empty or missing.`)}}else{const n=i.code;if(n.startsWith("http://hl7.org/fhirpath/System.")){throw new Error(`Cannot expand node '${e.id}', type '${n}' can never have children.`)}r=await t.getBaseType(n);if(!r||r.length===0){throw new Error(`Snapshot for type '${n}' is empty or missing.`)}}}if(!r||r.length===0){throw new Error(`Error expanding node '${e.id}' - the snapshot contains no elements.`)}const i=r[0].id;const o=e.id;const s=rewriteElementPaths(r,o,i);const c=toTree(s);const a={...e,children:c.children};return a};const fromTree=e=>{const t=[];function visit(e){if(["element","slice","headslice"].includes(e.nodeType)){if(!e.definition){throw new Error(`Node ${e.id} of type ${e.nodeType} is missing its definition`)}t.push(e.definition)}for(const t of e.children){visit(t)}}visit(e);return t};const toTree=e=>{if(e.length===0){throw new Error("Element array is empty")}const t=new Map;const makeSegments=e=>{const t=e.split(".");const n=t.map((e=>e.split(":")[0]));return{idSegments:t,pathSegments:n}};const createNode=(e,t)=>{const{idSegments:n,pathSegments:r}=makeSegments(e.id);const i=t||toNodeType(e);const o={id:e.id,path:e.path,idSegments:n,pathSegments:r,nodeType:i,children:[]};if(isNodeSliceable(o)){const t={id:e.id,path:e.path,idSegments:n,pathSegments:r,nodeType:"headslice",definition:e,children:[]};o.children.push(t)}else{o.definition=e;if(e.sliceName){o.sliceName=e.sliceName}}return o};const n=e[0];const r=createNode(n,"element");t.set(r.id,r);for(let n=1;n<e.length;n++){const r=e[n];const{idSegments:i}=makeSegments(r.id);const o=i[i.length-1];const s=o.includes(":");const c=s?o.split(":")[0]:o;const a=s?i.slice(0,-1).join(".")+`.${c}`:i.slice(0,-1).join(".");const f=t.get(a);if(!f){throw new Error(`Parent node not found for element ${r.id}`)}const u=createNode(r);if(isNodeSliceable(f)){if(s){f.children.push(u)}else{f.children[0].children.push(u)}}else{f.children.push(u)}t.set(u.id,u)}return r};const rewriteNodePaths=(e,t,n)=>{const r=fromTree(e);const i=rewriteElementPaths(r,t,n);const o=toTree(i);return o};const isNodeSliceable=e=>["array","poly","resliced"].includes(e.nodeType);const c={info:e=>console.log(e),warn:e=>console.warn(e),error:e=>console.error(e)};const defaultPrethrow=e=>{if(e instanceof Error){return e}const t=new Error(e);return t};const customPrethrower=e=>t=>{if(t instanceof Error){e.error(t);return t}const n=new Error(t);e.error(n);return n};const a={"3.0.2":"STU3","3.0":"STU3",R3:"STU3","4.0.0":"R4","4.0.1":"R4","4.0":"R4","4.3.0":"R4B",4.3:"R4B","5.0.0":"R5","5.0":"R5"};const f={STU3:"hl7.fhir.r3.core@3.0.2",R4:"hl7.fhir.r4.core@4.0.1",R4B:"hl7.fhir.r4b.core@4.3.0",R5:"hl7.fhir.r5.core@5.0.0"};const resolveFhirVersion=(e,t)=>{const n=a[e]||e;const r=f[n];if(!r){throw new Error(`Unsupported FHIR version: ${e}. 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