fasta-parser
Version:
Buffer Stream parser from FASTA to JSON
7 lines (5 loc) • 1.14 kB
JSON
[
{"id":"contig1","seq":"TCACCAACTACGAGATATGAGGTAAGCCAAAAAAGCACGTGGTGGCGCTCACCGACTGTTCCCAAACTGTAACTCATCGTTCCGTCAAGGCCTGACTTACTTCCCGGCCCTTTCCATGCGCGGACCATACCGTCCTAGTTCTTCGGTTATGTTTCCGATGTAGGAGTGAGCCTACCTCCGTTTGCGTCTTGTTACCAATGAAAAAGCTATGCACTTTGTACAGGGTGCCATCGGGTTTCTGAACTCTCAGATAGTGGGGATCCCGGGAAAGGGCCTATATTTGCGGTCCAACTTAGGCGTAAACCTCGATGCTACCTACTCAGACCCACCCCGCGCGGGGTAAATATGGCACTCATCCCAGCTGGTTCTTGGCGTTCTACGCAGCCACATGTTCATTAACAGTTGTCTGGTAGCACAAAAGTATTACCATGGTCCTAGAAGCCCGGCAGAGTTAGTTCGAACCTAATGCCACAAATGAGACAGGAC"},
{"id":"contig2","seq":"GCCAATGGGTACCGGACATTAGGTCGAGCTCAGTTCGGTAACGGAGAGACCCTGCGGCGTACTTAATTATGCATATGAAACGCGCCCAAGTGACGCCAGGCAAGTCTCAGCAGGTTCCCGTGTTAGCTCGAGGGTAAACATACAAGCCGATTGAACATGGGTTGGGGGCTTCAAATCGTCGAGGACCCCACAGTACCTCGGAGACCAAGTAGGGCACCCTATAGTTCGAAGCAGAACTATTTCGAGGGGCGAGCCCTCATCGTCTCTTCTGCGGATGACTTAACACGCTAGGGACGTGGAGTCGATTCCATCGATGGTTATAAA"},
{"id":"contig3 with | \"strange\" chars > in the header % 123","seq":"TCAAAGATTCGGAATGCTGTCTGGAGGGTGAATCTAACGGTGCGTATCTCGATTGCTCAGTCGCTTTTCGTACTGCGCGAAAGTTCGTACCGCTCATTCACTTGGTTCCGAAGCCTGTCCTGATATATGAATCCAAACTAGAGCGGGGCTCTTGACATTTGGAGTTGTAAATATCTAATACTCCAATCGG"}
]