drugflow-molstar/lib/spec.js

Molstar implementation for DrugFlow

"use strict";
Object.defineProperty(exports, "__esModule", { value: true });
exports.DefaultParams = exports.DefaultPluginUISpec = exports.DefaultPluginSpec = void 0;
exports.createPluginUI = createPluginUI;
var tslib_1 = require("tslib");
var React = tslib_1.__importStar(require("react"));
var ReactDOM = tslib_1.__importStar(require("react-dom"));
var volume_1 = require("Molstar/mol-plugin-ui/custom/volume");
var plugin_1 = require("Molstar/mol-plugin-ui/plugin");
var behavior_1 = require("Molstar/mol-plugin/behavior");
var transformers_1 = require("Molstar/mol-plugin/behavior/dynamic/volume-streaming/transformers");
var context_1 = require("Molstar/mol-plugin-ui/context");
var spec_1 = require("Molstar/mol-plugin/spec");
var config_1 = require("Molstar/mol-plugin/config");
var actions_1 = require("Molstar/mol-plugin-state/actions");
var labels_1 = require("./labels");
var sifts_mappings_behaviour_1 = require("./sifts-mappings-behaviour");
var DefaultPluginSpec = function () { return ({
    actions: [
        spec_1.PluginSpec.Action(actions_1.StateActions.Structure.EnableStructureCustomProps)
    ],
    behaviors: [
        spec_1.PluginSpec.Behavior(behavior_1.PluginBehaviors.Representation.HighlightLoci),
        spec_1.PluginSpec.Behavior(behavior_1.PluginBehaviors.Representation.SelectLoci),
        spec_1.PluginSpec.Behavior(labels_1.PDBeLociLabelProvider),
        spec_1.PluginSpec.Behavior(behavior_1.PluginBehaviors.Representation.FocusLoci),
        spec_1.PluginSpec.Behavior(behavior_1.PluginBehaviors.Camera.FocusLoci),
        spec_1.PluginSpec.Behavior(behavior_1.PluginBehaviors.Camera.CameraAxisHelper),
        spec_1.PluginSpec.Behavior(behavior_1.PluginBehaviors.CustomProps.StructureInfo),
        spec_1.PluginSpec.Behavior(behavior_1.PluginBehaviors.CustomProps.AccessibleSurfaceArea),
        spec_1.PluginSpec.Behavior(sifts_mappings_behaviour_1.PDBeSIFTSMapping, { autoAttach: true, showTooltip: true }),
        spec_1.PluginSpec.Behavior(behavior_1.PluginBehaviors.CustomProps.Interactions),
        spec_1.PluginSpec.Behavior(behavior_1.PluginBehaviors.CustomProps.SecondaryStructure),
        spec_1.PluginSpec.Behavior(behavior_1.PluginBehaviors.CustomProps.ValenceModel),
        spec_1.PluginSpec.Behavior(behavior_1.PluginBehaviors.CustomProps.CrossLinkRestraint),
    ],
    // animations: [],
    config: [
        [config_1.PluginConfig.VolumeStreaming.DefaultServer, 'https://www.ebi.ac.uk/pdbe/volume-server']
    ]
}); };
exports.DefaultPluginSpec = DefaultPluginSpec;
var DefaultPluginUISpec = function () { return (tslib_1.__assign(tslib_1.__assign({}, (0, exports.DefaultPluginSpec)()), { customParamEditors: [
        [transformers_1.CreateVolumeStreamingBehavior, volume_1.VolumeStreamingCustomControls]
    ] })); };
exports.DefaultPluginUISpec = DefaultPluginUISpec;
function createPluginUI(target, spec, options) {
    return tslib_1.__awaiter(this, void 0, void 0, function () {
        var ctx;
        return tslib_1.__generator(this, function (_a) {
            switch (_a.label) {
                case 0:
                    ctx = new context_1.PluginUIContext(spec || (0, exports.DefaultPluginUISpec)());
                    return [4 /*yield*/, ctx.init()];
                case 1:
                    _a.sent();
                    if (!(options === null || options === void 0 ? void 0 : options.onBeforeUIRender)) return [3 /*break*/, 3];
                    return [4 /*yield*/, options.onBeforeUIRender(ctx)];
                case 2:
                    _a.sent();
                    _a.label = 3;
                case 3:
                    ReactDOM.render(React.createElement(plugin_1.Plugin, { plugin: ctx }), target);
                    return [2 /*return*/, ctx];
            }
        });
    });
}
exports.DefaultParams = {
    moleculeId: undefined,
    superposition: undefined,
    superpositionParams: undefined,
    customData: undefined,
    ligandView: undefined,
    assemblyId: undefined,
    visualStyle: undefined,
    highlightColor: undefined,
    selectColor: undefined,
    hideStructure: undefined,
    hideCanvasControls: undefined,
    granularity: undefined,
    selection: undefined,
    mapSettings: undefined,
    selectBindings: undefined,
    focusBindings: undefined,
    defaultPreset: 'default',
    pdbeUrl: 'https://www.ebi.ac.uk/pdbe/',
    bgColor: { r: 0, g: 0, b: 0 },
    lighting: undefined,
    encoding: 'bcif',
    selectInteraction: true,
    loadMaps: false,
    validationAnnotation: false,
    domainAnnotation: false,
    lowPrecisionCoords: false,
    expanded: false,
    hideControls: false,
    pdbeLink: true,
    loadCartoonsOnly: false,
    landscape: false,
    reactive: false,
    subscribeEvents: false,
    alphafoldView: false,
    sequencePanel: false
};