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cttv.genome

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Lightweight genome browser for CTTV targets based on TnT Genome

CTTV/targetGenomeBrowser

51 lines (45 loc) • 2.03 kB
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var colors = { // proteins "protein coding" : d3.rgb('#A00000'), "pseudogene" : d3.rgb('#666666'), "processed transcript" : d3.rgb('#0033FF'), "ncRNA" : d3.rgb('#8B668B'), "antisense" : d3.rgb('#CBDD8B'), "TR gene" : d3.rgb('#AA00AA'), // transcripts "non coding transcript" : d3.rgb('#8B668B'), }; var legends = { // gene biotypes "protein_coding" : "protein coding", "pseudogene" : "pseudogene", "processed_pseudogene" : "pseudogene", "transcribed_processed_pseudogene" : "pseudogene", "unprocessed_pseudogene" : "pseudogene", "polymorphic_pseudogene" : "pseudogene", "unitary_pseudogene" : "pseudogene", "transcribed_unprocessed_pseudogene" : "pseudogene", "TR_V_pseudogene" : "pseudogene", "processed_transcript" : "processed transcript", "TEC" : "processed transcript", "sense_overlapping" : "processed transcript", "miRNA" : "ncRNA", "lincRNA" : "ncRNA", "misc_RNA" : "ncRNA", "snoRNA" : "ncRNA", "snRNA" : "ncRNA", "rRNA" : "ncRNA", "antisense" : "antisense", "sense_intronic" : "antisense", "TR_V_gene" : "TR gene", "TR_C_gene" : "TR gene", "TR_J_gene" : "TR gene", "TR_D_gene" : "TR gene", // transcript biotypes "retained_intron" : "non coding transcript", "nonsense_mediated_decay" : "protein coding", }; module.exports = exports = { color : colors, legend : legends, };