clustergrammer
Version:
This is a clustergram implemented in D3.js. I started from the example http://bost.ocks.org/mike/miserables/ and added the following features
1 lines • 128 kB
JSON
{"row_nodes": [{"group": [20.0, 17.0, 12.0, 9.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: CDK4", "clust": 22, "cat_0_index": 0, "rank": 35, "cat-0": "Gene Type: Interesting", "rankvar": 25, "ini": 38}, {"group": [27.0, 24.0, 16.0, 13.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: LMTK3", "clust": 27, "cat_0_index": 17, "rank": 12, "cat-0": "Gene Type: Not Interesting", "rankvar": 20, "ini": 37}, {"group": [36.0, 32.0, 22.0, 18.0, 7.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: LRRK2", "clust": 36, "cat_0_index": 18, "rank": 18, "cat-0": "Gene Type: Not Interesting", "rankvar": 3, "ini": 36}, {"group": [38.0, 34.0, 24.0, 19.0, 7.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: UHMK1", "clust": 35, "cat_0_index": 19, "rank": 4, "cat-0": "Gene Type: Not Interesting", "rankvar": 35, "ini": 35}, {"group": [22.0, 19.0, 12.0, 9.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: EGFR", "clust": 21, "cat_0_index": 1, "rank": 33, "cat-0": "Gene Type: Interesting", "rankvar": 28, "ini": 34}, {"group": [16.0, 13.0, 9.0, 8.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: STK32A", "clust": 15, "cat_0_index": 2, "rank": 20, "cat-0": "Gene Type: Interesting", "rankvar": 33, "ini": 33}, {"group": [21.0, 18.0, 12.0, 9.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: NRK", "clust": 23, "cat_0_index": 3, "rank": 37, "cat-0": "Gene Type: Interesting", "rankvar": 17, "ini": 32}, {"group": [18.0, 15.0, 10.0, 8.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: ERBB2", "clust": 17, "cat_0_index": 20, "rank": 15, "cat-0": "Gene Type: Not Interesting", "rankvar": 18, "ini": 31}, {"group": [13.0, 10.0, 6.0, 6.0, 3.0, 3.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: ERBB4", "clust": 10, "cat_0_index": 21, "rank": 1, "cat-0": "Gene Type: Not Interesting", "rankvar": 23, "ini": 30}, {"group": [14.0, 11.0, 7.0, 7.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: AAK1", "clust": 13, "cat_0_index": 22, "rank": 8, "cat-0": "Gene Type: Not Interesting", "rankvar": 10, "ini": 29}, {"group": [1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: SRPK3", "clust": 5, "cat_0_index": 23, "rank": 25, "cat-0": "Gene Type: Not Interesting", "rankvar": 36, "ini": 28}, {"group": [7.0, 4.0, 3.0, 3.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: STK39", "clust": 0, "cat_0_index": 4, "rank": 5, "cat-0": "Gene Type: Interesting", "rankvar": 27, "ini": 27}, {"group": [3.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: GRK4", "clust": 4, "cat_0_index": 24, "rank": 13, "cat-0": "Gene Type: Not Interesting", "rankvar": 34, "ini": 26}, {"group": [23.0, 20.0, 12.0, 9.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: TBK1", "clust": 20, "cat_0_index": 25, "rank": 36, "cat-0": "Gene Type: Not Interesting", "rankvar": 12, "ini": 25}, {"group": [33.0, 29.0, 20.0, 17.0, 7.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: INSRR", "clust": 33, "cat_0_index": 26, "rank": 30, "cat-0": "Gene Type: Not Interesting", "rankvar": 22, "ini": 24}, {"group": [32.0, 28.0, 19.0, 16.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: IRAK1", "clust": 29, "cat_0_index": 5, "rank": 26, "cat-0": "Gene Type: Interesting", "rankvar": 26, "ini": 23}, {"group": [17.0, 14.0, 9.0, 8.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: KDR", "clust": 16, "cat_0_index": 27, "rank": 27, "cat-0": "Gene Type: Not Interesting", "rankvar": 6, "ini": 22}, {"group": [29.0, 25.0, 17.0, 14.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: NPR1", "clust": 26, "cat_0_index": 6, "rank": 11, "cat-0": "Gene Type: Interesting", "rankvar": 2, "ini": 21}, {"group": [25.0, 22.0, 14.0, 11.0, 5.0, 5.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: PAK3", "clust": 24, "cat_0_index": 28, "rank": 10, "cat-0": "Gene Type: Not Interesting", "rankvar": 4, "ini": 20}, {"group": [8.0, 5.0, 4.0, 4.0, 2.0, 2.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: PDGFRA", "clust": 8, "cat_0_index": 7, "rank": 2, "cat-0": "Gene Type: Interesting", "rankvar": 11, "ini": 19}, {"group": [34.0, 30.0, 20.0, 17.0, 7.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: PDK4", "clust": 34, "cat_0_index": 29, "rank": 31, "cat-0": "Gene Type: Not Interesting", "rankvar": 15, "ini": 18}, {"group": [11.0, 8.0, 6.0, 6.0, 3.0, 3.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: ULK4", "clust": 11, "cat_0_index": 8, "rank": 0, "cat-0": "Gene Type: Interesting", "rankvar": 31, "ini": 17}, {"group": [28.0, 24.0, 16.0, 13.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: PRKCE", "clust": 28, "cat_0_index": 30, "rank": 19, "cat-0": "Gene Type: Not Interesting", "rankvar": 24, "ini": 16}, {"group": [5.0, 2.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: PRKG2", "clust": 2, "cat_0_index": 31, "rank": 29, "cat-0": "Gene Type: Not Interesting", "rankvar": 30, "ini": 15}, {"group": [30.0, 26.0, 18.0, 15.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: MAPK4", "clust": 30, "cat_0_index": 9, "rank": 22, "cat-0": "Gene Type: Interesting", "rankvar": 21, "ini": 14}, {"group": [9.0, 6.0, 4.0, 4.0, 2.0, 2.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: MAPK11", "clust": 9, "cat_0_index": 10, "rank": 7, "cat-0": "Gene Type: Interesting", "rankvar": 16, "ini": 13}, {"group": [19.0, 16.0, 11.0, 8.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: STK31", "clust": 18, "cat_0_index": 11, "rank": 23, "cat-0": "Gene Type: Interesting", "rankvar": 29, "ini": 12}, {"group": [31.0, 27.0, 18.0, 15.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: GRK1", "clust": 31, "cat_0_index": 32, "rank": 32, "cat-0": "Gene Type: Not Interesting", "rankvar": 19, "ini": 11}, {"group": [15.0, 12.0, 8.0, 7.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: ROS1", "clust": 14, "cat_0_index": 12, "rank": 14, "cat-0": "Gene Type: Interesting", "rankvar": 8, "ini": 10}, {"group": [24.0, 21.0, 13.0, 10.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: MAP2K4", "clust": 19, "cat_0_index": 13, "rank": 34, "cat-0": "Gene Type: Interesting", "rankvar": 1, "ini": 9}, {"group": [37.0, 33.0, 23.0, 18.0, 7.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: SRC", "clust": 37, "cat_0_index": 14, "rank": 28, "cat-0": "Gene Type: Interesting", "rankvar": 5, "ini": 8}, {"group": [26.0, 23.0, 15.0, 12.0, 5.0, 5.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: TGFBR1", "clust": 25, "cat_0_index": 15, "rank": 9, "cat-0": "Gene Type: Interesting", "rankvar": 9, "ini": 7}, {"group": [2.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: CAMK2B", "clust": 6, "cat_0_index": 33, "rank": 16, "cat-0": "Gene Type: Not Interesting", "rankvar": 37, "ini": 6}, {"group": [10.0, 7.0, 5.0, 5.0, 2.0, 2.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: STK24", "clust": 7, "cat_0_index": 16, "rank": 3, "cat-0": "Gene Type: Interesting", "rankvar": 0, "ini": 5}, {"group": [4.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: DCLK3", "clust": 3, "cat_0_index": 34, "rank": 21, "cat-0": "Gene Type: Not Interesting", "rankvar": 32, "ini": 4}, {"group": [35.0, 31.0, 21.0, 17.0, 7.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: LATS1", "clust": 32, "cat_0_index": 35, "rank": 24, "cat-0": "Gene Type: Not Interesting", "rankvar": 7, "ini": 3}, {"group": [6.0, 3.0, 2.0, 2.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: NEK9", "clust": 1, "cat_0_index": 36, "rank": 6, "cat-0": "Gene Type: Not Interesting", "rankvar": 14, "ini": 2}, {"group": [12.0, 9.0, 6.0, 6.0, 3.0, 3.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: MYLK3", "clust": 12, "cat_0_index": 37, "rank": 17, "cat-0": "Gene Type: Not Interesting", "rankvar": 13, "ini": 1}], "col_nodes": [{"group": [20.0, 17.0, 12.0, 9.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: CDK4", "clust": 22, "cat_0_index": 0, "rank": 35, "cat-0": "Gene Type: Interesting", "rankvar": 25, "ini": 38}, {"group": [27.0, 24.0, 16.0, 13.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: LMTK3", "clust": 27, "cat_0_index": 17, "rank": 12, "cat-0": "Gene Type: Not Interesting", "rankvar": 20, "ini": 37}, {"group": [36.0, 32.0, 22.0, 18.0, 7.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: LRRK2", "clust": 36, "cat_0_index": 18, "rank": 18, "cat-0": "Gene Type: Not Interesting", "rankvar": 3, "ini": 36}, {"group": [38.0, 34.0, 24.0, 19.0, 7.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: UHMK1", "clust": 35, "cat_0_index": 19, "rank": 4, "cat-0": "Gene Type: Not Interesting", "rankvar": 35, "ini": 35}, {"group": [22.0, 19.0, 12.0, 9.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: EGFR", "clust": 21, "cat_0_index": 1, "rank": 33, "cat-0": "Gene Type: Interesting", "rankvar": 28, "ini": 34}, {"group": [16.0, 13.0, 9.0, 8.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: STK32A", "clust": 15, "cat_0_index": 2, "rank": 20, "cat-0": "Gene Type: Interesting", "rankvar": 33, "ini": 33}, {"group": [21.0, 18.0, 12.0, 9.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: NRK", "clust": 23, "cat_0_index": 3, "rank": 37, "cat-0": "Gene Type: Interesting", "rankvar": 17, "ini": 32}, {"group": [18.0, 15.0, 10.0, 8.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: ERBB2", "clust": 17, "cat_0_index": 20, "rank": 15, "cat-0": "Gene Type: Not Interesting", "rankvar": 18, "ini": 31}, {"group": [13.0, 10.0, 6.0, 6.0, 3.0, 3.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: ERBB4", "clust": 10, "cat_0_index": 21, "rank": 1, "cat-0": "Gene Type: Not Interesting", "rankvar": 23, "ini": 30}, {"group": [14.0, 11.0, 7.0, 7.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: AAK1", "clust": 13, "cat_0_index": 22, "rank": 8, "cat-0": "Gene Type: Not Interesting", "rankvar": 10, "ini": 29}, {"group": [1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: SRPK3", "clust": 5, "cat_0_index": 23, "rank": 25, "cat-0": "Gene Type: Not Interesting", "rankvar": 36, "ini": 28}, {"group": [7.0, 4.0, 3.0, 3.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: STK39", "clust": 0, "cat_0_index": 4, "rank": 5, "cat-0": "Gene Type: Interesting", "rankvar": 27, "ini": 27}, {"group": [3.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: GRK4", "clust": 4, "cat_0_index": 24, "rank": 13, "cat-0": "Gene Type: Not Interesting", "rankvar": 34, "ini": 26}, {"group": [23.0, 20.0, 12.0, 9.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: TBK1", "clust": 20, "cat_0_index": 25, "rank": 36, "cat-0": "Gene Type: Not Interesting", "rankvar": 12, "ini": 25}, {"group": [33.0, 29.0, 20.0, 17.0, 7.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: INSRR", "clust": 33, "cat_0_index": 26, "rank": 30, "cat-0": "Gene Type: Not Interesting", "rankvar": 22, "ini": 24}, {"group": [32.0, 28.0, 19.0, 16.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: IRAK1", "clust": 29, "cat_0_index": 5, "rank": 26, "cat-0": "Gene Type: Interesting", "rankvar": 26, "ini": 23}, {"group": [17.0, 14.0, 9.0, 8.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: KDR", "clust": 16, "cat_0_index": 27, "rank": 27, "cat-0": "Gene Type: Not Interesting", "rankvar": 6, "ini": 22}, {"group": [29.0, 25.0, 17.0, 14.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: NPR1", "clust": 26, "cat_0_index": 6, "rank": 11, "cat-0": "Gene Type: Interesting", "rankvar": 2, "ini": 21}, {"group": [25.0, 22.0, 14.0, 11.0, 5.0, 5.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: PAK3", "clust": 24, "cat_0_index": 28, "rank": 10, "cat-0": "Gene Type: Not Interesting", "rankvar": 4, "ini": 20}, {"group": [8.0, 5.0, 4.0, 4.0, 2.0, 2.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: PDGFRA", "clust": 8, "cat_0_index": 7, "rank": 2, "cat-0": "Gene Type: Interesting", "rankvar": 11, "ini": 19}, {"group": [34.0, 30.0, 20.0, 17.0, 7.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: PDK4", "clust": 34, "cat_0_index": 29, "rank": 31, "cat-0": "Gene Type: Not Interesting", "rankvar": 15, "ini": 18}, {"group": [11.0, 8.0, 6.0, 6.0, 3.0, 3.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: ULK4", "clust": 11, "cat_0_index": 8, "rank": 0, "cat-0": "Gene Type: Interesting", "rankvar": 31, "ini": 17}, {"group": [28.0, 24.0, 16.0, 13.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: PRKCE", "clust": 28, "cat_0_index": 30, "rank": 19, "cat-0": "Gene Type: Not Interesting", "rankvar": 24, "ini": 16}, {"group": [5.0, 2.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: PRKG2", "clust": 2, "cat_0_index": 31, "rank": 29, "cat-0": "Gene Type: Not Interesting", "rankvar": 30, "ini": 15}, {"group": [30.0, 26.0, 18.0, 15.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: MAPK4", "clust": 30, "cat_0_index": 9, "rank": 22, "cat-0": "Gene Type: Interesting", "rankvar": 21, "ini": 14}, {"group": [9.0, 6.0, 4.0, 4.0, 2.0, 2.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: MAPK11", "clust": 9, "cat_0_index": 10, "rank": 7, "cat-0": "Gene Type: Interesting", "rankvar": 16, "ini": 13}, {"group": [19.0, 16.0, 11.0, 8.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: STK31", "clust": 18, "cat_0_index": 11, "rank": 23, "cat-0": "Gene Type: Interesting", "rankvar": 29, "ini": 12}, {"group": [31.0, 27.0, 18.0, 15.0, 6.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: GRK1", "clust": 31, "cat_0_index": 32, "rank": 32, "cat-0": "Gene Type: Not Interesting", "rankvar": 19, "ini": 11}, {"group": [15.0, 12.0, 8.0, 7.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: ROS1", "clust": 14, "cat_0_index": 12, "rank": 14, "cat-0": "Gene Type: Interesting", "rankvar": 8, "ini": 10}, {"group": [24.0, 21.0, 13.0, 10.0, 4.0, 4.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: MAP2K4", "clust": 19, "cat_0_index": 13, "rank": 34, "cat-0": "Gene Type: Interesting", "rankvar": 1, "ini": 9}, {"group": [37.0, 33.0, 23.0, 18.0, 7.0, 6.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: SRC", "clust": 37, "cat_0_index": 14, "rank": 28, "cat-0": "Gene Type: Interesting", "rankvar": 5, "ini": 8}, {"group": [26.0, 23.0, 15.0, 12.0, 5.0, 5.0, 1.0, 1.0, 1.0, 1.0, 1.0], "name": "Gene: TGFBR1", "clust": 25, "cat_0_index": 15, "rank": 9, "cat-0": "Gene Type: 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