bokehmol/dist/bokehmol.json

Handle molecules with bokeh

{"version":4,"artifacts":[{"module":{"file":"/home/runner/work/bokehmol/bokehmol/bokehmol/dist/lib/index.js","base":"/home/runner/work/bokehmol/bokehmol/bokehmol/dist/lib","base_path":"index.js","canonical":"index","resolution":"ESM","id":"c27055c896","hash":"c27055c8962dedade519fb55f7b9237642b7ea670f0fb8f1b840514afd5feae1","source":"\"use strict\";\nObject.defineProperty(exports, \"__esModule\", { value: true });\nexports.bokehmol = void 0;\nconst tslib_1 = require(\"tslib\");\nconst bokehmol = tslib_1.__importStar(require(\"./models\"));\nexports.bokehmol = bokehmol;\nconst base_1 = require(\"@bokehjs/base\");\n(0, base_1.register_models)(bokehmol);\n//# sourceMappingURL=index.js.map\n","type":"js","dependency_paths":[["./models","/home/runner/work/bokehmol/bokehmol/bokehmol/dist/lib/models/index.js"]],"dependency_map":[],"exported":[],"externals":[],"shims":[]},"code":{"source":"/* index.js */ function _(require, module, exports, __esModule, __esExport) {\n    __esModule();\n    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base_formatter_1 = require(\"./base_formatter\");\nObject.defineProperty(exports, \"BaseFormatter\", { enumerable: true, get: function () { return base_formatter_1.BaseFormatter; } });\nvar base_hover_1 = require(\"./base_hover\");\nObject.defineProperty(exports, \"BaseHover\", { enumerable: true, get: function () { return base_hover_1.BaseHover; } });\nvar rdkit_formatter_1 = require(\"./rdkit_formatter\");\nObject.defineProperty(exports, \"RDKitFormatter\", { enumerable: true, get: function () { return rdkit_formatter_1.RDKitFormatter; } });\nvar rdkit_hover_1 = require(\"./rdkit_hover\");\nObject.defineProperty(exports, \"RDKitHover\", { enumerable: true, get: function () { return rdkit_hover_1.RDKitHover; } });\nvar smilesdrawer_formatter_1 = require(\"./smilesdrawer_formatter\");\nObject.defineProperty(exports, \"SmilesDrawerFormatter\", { enumerable: true, get: function () { return smilesdrawer_formatter_1.SmilesDrawerFormatter; } });\nvar smilesdrawer_hover_1 = require(\"./smilesdrawer_hover\");\nObject.defineProperty(exports, \"SmilesDrawerHover\", { enumerable: true, get: function () { return smilesdrawer_hover_1.SmilesDrawerHover; } });\n//# sourceMappingURL=index.js.map\n","type":"js","dependency_paths":[["./base_formatter","/home/runner/work/bokehmol/bokehmol/bokehmol/dist/lib/models/base_formatter.js"],["./base_hover","/home/runner/work/bokehmol/bokehmol/bokehmol/dist/lib/models/base_hover.js"],["./rdkit_formatter","/home/runner/work/bokehmol/bokehmol/bokehmol/dist/lib/models/rdkit_formatter.js"],["./rdkit_hover","/home/runner/work/bokehmol/bokehmol/bokehmol/dist/lib/models/rdkit_hover.js"],["./smilesdrawer_formatter","/home/runner/work/bokehmol/bokehmol/bokehmol/dist/lib/models/smilesdrawer_formatter.js"],["./smilesdrawer_hover","/home/runner/work/bokehmol/bokehmol/bokehmol/dist/lib/models/smilesdrawer_hover.js"]],"dependency_map":[],"exported":[{"type":"bindings","bindings":[[null,"BaseFormatter"]],"module":"./base_formatter"},{"type":"bindings","bindings":[[null,"BaseHover"]],"module":"./base_hover"},{"type":"bindings","bindings":[[null,"RDKitFormatter"]],"module":"./rdkit_formatter"},{"type":"bindings","bindings":[[null,"RDKitHover"]],"module":"./rdkit_hover"},{"type":"bindings","bindings":[[null,"SmilesDrawerFormatter"]],"module":"./smilesdrawer_formatter"},{"type":"bindings","bindings":[[null,"SmilesDrawerHover"]],"module":"./smilesdrawer_hover"}],"externals":[],"shims":[]},"code":{"source":"/* models/index.js */ function _(require, module, exports, __esModule, __esExport) {\n    __esModule();\n    var base_formatter_1 = require(\"bdbba644e6\") /* ./base_formatter */;\n    __esExport(\"BaseFormatter\", base_formatter_1.BaseFormatter);\n    var base_hover_1 = require(\"b3aabca0fa\") /* ./base_hover */;\n    __esExport(\"BaseHover\", base_hover_1.BaseHover);\n    var rdkit_formatter_1 = require(\"66b72b8836\") /* ./rdkit_formatter */;\n    __esExport(\"RDKitFormatter\", rdkit_formatter_1.RDKitFormatter);\n    var rdkit_hover_1 = require(\"db381e1cc8\") /* ./rdkit_hover */;\n    __esExport(\"RDKitHover\", rdkit_hover_1.RDKitHover);\n    var smilesdrawer_formatter_1 = require(\"be6f45e05e\") /* ./smilesdrawer_formatter */;\n    __esExport(\"SmilesDrawerFormatter\", smilesdrawer_formatter_1.SmilesDrawerFormatter);\n    var smilesdrawer_hover_1 = require(\"6c967671db\") /* ./smilesdrawer_hover */;\n    __esExport(\"SmilesDrawerHover\", smilesdrawer_hover_1.SmilesDrawerHover);\n}\n","min_source":"function _(e,r,a,t,o){t(),o(\"BaseFormatter\",e(\"bdbba644e6\").BaseFormatter),o(\"BaseHover\",e(\"b3aabca0fa\").BaseHover),o(\"RDKitFormatter\",e(\"66b72b8836\").RDKitFormatter),o(\"RDKitHover\",e(\"db381e1cc8\").RDKitHover),o(\"SmilesDrawerFormatter\",e(\"be6f45e05e\").SmilesDrawerFormatter),o(\"SmilesDrawerHover\",e(\"6c967671db\").SmilesDrawerHover)}\n//# 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this.height, this.mols_per_row);\n    }\n    // @ts-expect-error\n    draw_svg(smiles) {\n        const el = this.makeSVGElement();\n        const svg = el.outerHTML;\n        el.remove();\n        return svg;\n    }\n    format(value, format, special_vars) {\n        format;\n        special_vars;\n        return Array.isArray(value) ? this.draw_grid(value) : this.draw_svg(value);\n    }\n}\nexports.BaseFormatter = BaseFormatter;\n_a = BaseFormatter;\nBaseFormatter.__name__ = \"BaseFormatter\";\nBaseFormatter.__module__ = \"bokehmol.models.base_formatter\";\n(() => {\n    _a.define(({ Int }) => ({\n        width: [Int, 160],\n        height: [Int, 120],\n        mols_per_row: [Int, 5],\n    }));\n})();\n//# 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svg.setAttributeNS(null, \"width\", \"\" + this.width);\n            svg.setAttributeNS(null, \"height\", \"\" + this.height);\n            return svg;\n        }\n        draw_grid(smiles_array) {\n            const images = [];\n            smiles_array.forEach((smiles) => {\n                let svg = this.draw_svg(smiles);\n                images.push(svg);\n            });\n            return (0, combinesvg_1.combineSVGs)(images, this.width, this.height, this.mols_per_row);\n        }\n        // @ts-expect-error\n        draw_svg(smiles) {\n            const el = this.makeSVGElement();\n            const svg = el.outerHTML;\n            el.remove();\n            return svg;\n        }\n        format(value, format, special_vars) {\n            format;\n            special_vars;\n            return Array.isArray(value) ? this.draw_grid(value) : this.draw_svg(value);\n        }\n    }\n    exports.BaseFormatter = BaseFormatter;\n    _a = BaseFormatter;\n    BaseFormatter.__name__ = 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e.remove(),r}format(t,e,r){return Array.isArray(t)?this.draw_grid(t):this.draw_svg(t)}}r.BaseFormatter=m,i=m,m.__name__=\"BaseFormatter\",m.__module__=\"bokehmol.models.base_formatter\",i.define((({Int:t})=>({width:[t,160],height:[t,120],mols_per_row:[t,5]})))}\n//# 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sourceMappingURL=combinesvg.js.map\n","type":"js","dependency_paths":[],"dependency_map":[],"exported":[{"type":"named","name":"combineSVGs"}],"externals":[],"shims":[]},"code":{"source":"/* models/combinesvg.js */ function _(require, module, exports, __esModule, __esExport) {\n    __esModule();\n    exports.combineSVGs = combineSVGs;\n    function combineSVGs(images, width, height, maxMolsRow) {\n        let grid = [];\n        let maxWidth = width;\n        let maxHeight = height;\n        const parser = new DOMParser();\n        for (let i = 0; i < images.length; i++) {\n            let svg = images[i];\n            let imgWidth = width;\n            let imgHeight = height;\n            // handle RDKit's edge case when width or height is set to -1\n            if ((width < 0) || (height < 0)) {\n                // parse directly from SVG element\n                let el = parser.parseFromString(svg, 'image/svg+xml').firstChild;\n                if (width < 0) {\n                    // @ts-expect-error\n                    imgWidth = el.width.baseVal.value;\n                    if (imgWidth > maxWidth) {\n                        maxWidth = imgWidth;\n                    }\n                    else {\n                        imgWidth = maxWidth;\n                    }\n                }\n                if (height < 0)\n                    // @ts-expect-error\n                    imgHeight = el.height.baseVal.value;\n                if (imgHeight > maxHeight) {\n                    maxHeight = imgHeight;\n                }\n                else {\n                    imgHeight = maxHeight;\n                }\n            }\n            let x = imgWidth * (i % maxMolsRow);\n            let y = imgHeight * Math.floor(i / maxMolsRow);\n            let b64dump = btoa(svg);\n            grid.push(`<image id=\"molecule-${i}\" transform=\"translate(${x},${y})\" href='data:image/svg+xml;base64,${b64dump}'></image>`);\n        }\n        const parentWidth = maxWidth * Math.min(maxMolsRow, images.length);\n        const parentHeight = maxHeight * Math.ceil(images.length / maxMolsRow);\n        return `<svg width=\"${parentWidth}\" height=\"${parentHeight}\">${grid.join(\"\\n\")}</svg>`;\n    }\n}\n","min_source":"function _(e,t,a,l,i){l(),a.combineSVGs=function(e,t,a,l){let i=[],n=t,s=a;const h=new DOMParser;for(let g=0;g<e.length;g++){let r=e[g],o=t,m=a;if(t<0||a<0){let e=h.parseFromString(r,\"image/svg+xml\").firstChild;t<0&&(o=e.width.baseVal.value,o>n?n=o:o=n),a<0&&(m=e.height.baseVal.value),m>s?s=m:m=s}let f=o*(g%l),c=m*Math.floor(g/l),u=btoa(r);i.push(`<image id=\"molecule-${g}\" transform=\"translate(${f},${c})\" href='data:image/svg+xml;base64,${u}'></image>`)}const g=n*Math.min(l,e.length),r=s*Math.ceil(e.length/l);return`<svg width=\"${g}\" height=\"${r}\">${i.join(\"\\n\")}</svg>`}}\n//# 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strict\";\nvar _a;\nObject.defineProperty(exports, \"__esModule\", { value: true });\nexports.BaseHover = exports.BaseHoverView = void 0;\nconst dom_1 = require(\"@bokehjs/core/dom\");\nconst templating_1 = require(\"@bokehjs/core/util/templating\");\nconst types_1 = require(\"@bokehjs/core/util/types\");\nconst hover_tool_1 = require(\"@bokehjs/models/tools/inspectors/hover_tool\");\nconst icons_css_1 = require(\"@bokehjs/styles/icons.css\");\nclass BaseHoverView extends hover_tool_1.HoverToolView {\n    _render_tooltips(ds, vars) {\n        const { tooltips, smiles_column } = this.model;\n        const i = vars.index;\n        let user_tooltip = tooltips;\n        if (user_tooltip === null) {\n            user_tooltip = \"\";\n        }\n        if (!(0, types_1.isString)(user_tooltip)) {\n            const template = this._template_el ?? (\n            // @ts-ignore\n            this._template_el = this._create_template(user_tooltip));\n            // @ts-ignore\n            user_tooltip = this._render_template(template, user_tooltip, ds, vars).outerHTML;\n        }\n        const mol_tooltip = \"<div>@\" + smiles_column + \"{custom}</div>\" + user_tooltip;\n        const content = (0, templating_1.replace_placeholders)({ html: mol_tooltip }, ds, i, this.model.formatters, vars);\n        return (0, dom_1.div)(content);\n    }\n}\nexports.BaseHoverView = BaseHoverView;\nBaseHoverView.__name__ = \"BaseHoverView\";\nclass BaseHover extends hover_tool_1.HoverTool {\n    get computed_icon() {\n        return \"data:image/png;base64,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\";\n    }\n    constructor(attrs) {\n        super(attrs);\n        this.tool_icon = icons_css_1.tool_icon_hover;\n    }\n}\nexports.BaseHover = BaseHover;\n_a = BaseHover;\nBaseHover.__name__ = \"BaseHover\";\nBaseHover.__module__ = \"bokehmol.models.base_hover\";\n(() => {\n    _a.prototype.default_view = BaseHoverView;\n    _a.define(({ Str, Int }) => ({\n        smiles_column: [Str, \"SMILES\"],\n        width: [Int, 160],\n        height: [Int, 120],\n        mols_per_row: [Int, 3],\n    }));\n    _a.override({\n        tooltips: [],\n    });\n})();\n//# sourceMappingURL=base_hover.js.map\n","type":"js","dependency_paths":[],"dependency_map":[],"exported":[{"type":"named","name":"BaseHoverView"},{"type":"named","name":"BaseHover"}],"externals":[],"shims":[]},"code":{"source":"/* models/base_hover.js */ function _(require, module, exports, __esModule, __esExport) {\n    var _a;\n    __esModule();\n    const dom_1 = require(\"@bokehjs/core/dom\");\n    const templating_1 = require(\"@bokehjs/core/util/templating\");\n    const types_1 = require(\"@bokehjs/core/util/types\");\n    const hover_tool_1 = require(\"@bokehjs/models/tools/inspectors/hover_tool\");\n    const icons_css_1 = require(\"@bokehjs/styles/icons.css\");\n    class BaseHoverView extends hover_tool_1.HoverToolView {\n        _render_tooltips(ds, vars) {\n            const { tooltips, smiles_column } = this.model;\n            const i = vars.index;\n            let user_tooltip = tooltips;\n            if (user_tooltip === null) {\n                user_tooltip = \"\";\n            }\n            if (!(0, types_1.isString)(user_tooltip)) {\n                const template = this._template_el ?? (\n                // @ts-ignore\n                this._template_el = this._create_template(user_tooltip));\n                // @ts-ignore\n                user_tooltip = this._render_template(template, user_tooltip, ds, vars).outerHTML;\n            }\n            const mol_tooltip = \"<div>@\" + smiles_column + \"{custom}</div>\" + user_tooltip;\n            const content = (0, templating_1.replace_placeholders)({ html: mol_tooltip }, ds, i, this.model.formatters, vars);\n            return (0, dom_1.div)(content);\n        }\n    }\n    exports.BaseHoverView = BaseHoverView;\n    BaseHoverView.__name__ = \"BaseHoverView\";\n    class BaseHover extends hover_tool_1.HoverTool {\n        get computed_icon() {\n            return 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   (() => {\n        _a.prototype.default_view = BaseHoverView;\n        _a.define(({ Str, Int }) => ({\n            smiles_column: [Str, \"SMILES\"],\n            width: [Int, 160],\n            height: [Int, 120],\n            mols_per_row: [Int, 3],\n        }));\n        _a.override({\n            tooltips: [],\n        });\n    })();\n}\n","min_source":"function _(e,i,o,I,t){var s;I();const A=e(\"@bokehjs/core/dom\"),r=e(\"@bokehjs/core/util/templating\"),l=e(\"@bokehjs/core/util/types\"),h=e(\"@bokehjs/models/tools/inspectors/hover_tool\"),_=e(\"@bokehjs/styles/icons.css\");class n extends h.HoverToolView{_render_tooltips(e,i){const{tooltips:o,smiles_column:I}=this.model,t=i.index;let s=o;if(null===s&&(s=\"\"),!(0,l.isString)(s)){const o=this._template_el??(this._template_el=this._create_template(s));s=this._render_template(o,s,e,i).outerHTML}const h=\"<div>@\"+I+\"{custom}</div>\"+s,_=(0,r.replace_placeholders)({html:h},e,t,this.model.formatters,i);return(0,A.div)(_)}}o.BaseHoverView=n,n.__name__=\"BaseHoverView\";class a extends h.HoverTool{get computed_icon(){return\"data:image/png;base64,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\"}constructor(e){super(e),this.tool_icon=_.tool_icon_hover}}o.BaseHover=a,s=a,a.__name__=\"BaseHover\",a.__module__=\"bokehmol.models.base_hover\",s.prototype.default_view=n,s.define((({Str:e,Int:i})=>({smiles_column:[e,\"SMILES\"],width:[i,160],height:[i,120],mols_per_row:[i,3]}))),s.override({tooltips:[]})}\n//# 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strict\";\nvar _a;\nObject.defineProperty(exports, \"__esModule\", { value: true });\nexports.RDKitFormatter = void 0;\nconst base_formatter_1 = require(\"./base_formatter\");\nclass RDKitFormatter extends base_formatter_1.BaseFormatter {\n    constructor(attrs) {\n        super(attrs);\n    }\n    initialize() {\n        super.initialize();\n        this.onRDKitReady(true, false, () => {\n            // @ts-expect-error\n            initRDKitModule().then((RDKitModule) => {\n                this.RDKitModule = RDKitModule;\n                console.log(\"RDKit version: \" + RDKitModule.version());\n            });\n        });\n    }\n    onRDKitReady(init, lib, callback) {\n        this.hasLoadedRDKit(init, lib) ? callback() : setTimeout(() => {\n            this.onRDKitReady(init, lib, callback);\n        }, 100);\n    }\n    hasLoadedRDKit(init, lib) {\n        // @ts-expect-error\n        return (init ? typeof initRDKitModule !== \"undefined\" : true)\n            && (lib ? typeof this.RDKitModule !== \"undefined\" : true);\n    }\n    setupRDKitOptions() {\n        this.onRDKitReady(true, true, () => {\n            this.RDKitModule.prefer_coordgen(this.prefer_coordgen);\n        });\n        this.json_mol_opts = JSON.stringify({\n            removeHs: this.remove_hs,\n            sanitize: this.sanitize,\n            kekulize: this.kekulize,\n        });\n        this.json_draw_opts = JSON.stringify({\n            width: this.width,\n            height: this.height,\n            ...this.draw_options,\n        });\n        return this.json_draw_opts;\n    }\n    draw_svg(smiles) {\n        const draw_opts = this.json_draw_opts ?? this.setupRDKitOptions();\n        var mol;\n        this.onRDKitReady(true, true, () => {\n            mol = this.RDKitModule.get_mol(smiles, this.json_mol_opts);\n        });\n        // @ts-expect-error\n        if (typeof mol === \"undefined\") {\n            console.log(\"Attempting to display structures before RDKit has been loaded.\");\n        }\n        else if (mol !== null && mol.is_valid()) {\n            const svg = mol.get_svg_with_highlights(draw_opts);\n            mol.delete();\n            return svg;\n        }\n        return super.draw_svg(smiles);\n    }\n}\nexports.RDKitFormatter = RDKitFormatter;\n_a = RDKitFormatter;\nRDKitFormatter.__name__ = \"RDKitFormatter\";\nRDKitFormatter.__module__ = \"bokehmol.models.rdkit_formatter\";\n(() => {\n    _a.define(({ Bool, Dict, Unknown }) => ({\n        prefer_coordgen: [Bool, true],\n        remove_hs: [Bool, true],\n        sanitize: [Bool, true],\n        kekulize: [Bool, true],\n        draw_options: [Dict(Unknown), {}],\n    }));\n})();\n//# sourceMappingURL=rdkit_formatter.js.map\n","type":"js","dependency_paths":[["./base_formatter","/home/runner/work/bokehmol/bokehmol/bokehmol/dist/lib/models/base_formatter.js"]],"dependency_map":[],"exported":[{"type":"named","name":"RDKitFormatter"}],"externals":[],"shims":[]},"code":{"source":"/* models/rdkit_formatter.js */ function _(require, module, exports, __esModule, __esExport) {\n    var _a;\n    __esModule();\n    const base_formatter_1 = require(\"bdbba644e6\") /* ./base_formatter */;\n    class RDKitFormatter extends base_formatter_1.BaseFormatter {\n        constructor(attrs) {\n            super(attrs);\n        }\n        initialize() {\n            super.initialize();\n            this.onRDKitReady(true, false, () => {\n                // @ts-expect-error\n                initRDKitModule().then((RDKitModule) => {\n                    this.RDKitModule = RDKitModule;\n                    console.log(\"RDKit version: \" + RDKitModule.version());\n                });\n            });\n        }\n        onRDKitReady(init, lib, callback) {\n            this.hasLoadedRDKit(init, lib) ? callback() : setTimeout(() => {\n                this.onRDKitReady(init, lib, callback);\n            }, 100);\n        }\n        hasLoadedRDKit(init, lib) {\n            // @ts-expect-error\n            return (init ? typeof initRDKitModule !== \"undefined\" : true)\n                && (lib ? typeof this.RDKitModule !== \"undefined\" : true);\n        }\n        setupRDKitOptions() {\n            this.onRDKitReady(true, true, () => {\n                this.RDKitModule.prefer_coordgen(this.prefer_coordgen);\n            });\n            this.json_mol_opts = JSON.stringify({\n                removeHs: this.remove_hs,\n                sanitize: this.sanitize,\n                kekulize: this.kekulize,\n            });\n            this.json_draw_opts = JSON.stringify({\n                width: this.width,\n                height: this.height,\n                ...this.draw_options,\n            });\n            return this.json_draw_opts;\n        }\n        draw_svg(smiles) {\n            const draw_opts = this.json_draw_opts ?? this.setupRDKitOptions();\n            var mol;\n            this.onRDKitReady(true, true, () => {\n                mol = this.RDKitModule.get_mol(smiles, this.json_mol_opts);\n            });\n            // @ts-expect-error\n            if (typeof mol === \"undefined\") {\n                console.log(\"Attempting to display structures before RDKit has been loaded.\");\n            }\n            else if (mol !== null && mol.is_valid()) {\n                const svg = mol.get_svg_with_highlights(draw_opts);\n                mol.delete();\n                return svg;\n            }\n            return super.draw_svg(smiles);\n        }\n    }\n    exports.RDKitFormatter = RDKitFormatter;\n    _a = RDKitFormatter;\n    RDKitFormatter.__name__ = \"RDKitFormatter\";\n    RDKitFormatter.__module__ = \"bokehmol.models.rdkit_formatter\";\n    (() => {\n        _a.define(({ Bool, Dict, Unknown }) => ({\n            prefer_coordgen: [Bool, true],\n            remove_hs: [Bool, true],\n            sanitize: [Bool, true],\n            kekulize: [Bool, true],\n            draw_options: [Dict(Unknown), {}],\n        }));\n    })();\n}\n","min_source":"function _(t,i,e,s,o){var n;s();const r=t(\"bdbba644e6\");class d extends r.BaseFormatter{constructor(t){super(t)}initialize(){super.initialize(),this.onRDKitReady(!0,!1,(()=>{initRDKitModule().then((t=>{this.RDKitModule=t,console.log(\"RDKit version: \"+t.version())}))}))}onRDKitReady(t,i,e){this.hasLoadedRDKit(t,i)?e():setTimeout((()=>{this.onRDKitReady(t,i,e)}),100)}hasLoadedRDKit(t,i){return!(t&&\"undefined\"==typeof initRDKitModule||i&&void 0===this.RDKitModule)}setupRDKitOptions(){return this.onRDKitReady(!0,!0,(()=>{this.RDKitModule.prefer_coordgen(this.prefer_coordgen)})),this.json_mol_opts=JSON.stringify({removeHs:this.remove_hs,sanitize:this.sanitize,kekulize:this.kekulize}),this.json_draw_opts=JSON.stringify({width:this.width,height:this.height,...this.draw_options}),this.json_draw_opts}draw_svg(t){const i=this.json_draw_opts??this.setupRDKitOptions();var 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