biswebnode/bin/bw_mapelectrodes.xml

A node.js implementation of BioImage Suite Web command line tools in Javascript and WebAssembly

<?xml version="1.0" encoding="utf-8"?>
<executable>
	<category>BisWEB</category>
	<title>Map Electrode Grids</title>
	<description>Label electrode grids with regions</description>
	<version>1.3.0b2</version>
	<documentation-url>https://bioimagesuiteweb.github.io/bisweb-manual</documentation-url>
	<license>GPL v2</license>
	<contributor>Xenios Papademetris</contributor>

<acknowledgements>Funding for this work was provided by the NIH Brain Initiative under grant R24 MH114805.</acknowledgements>
	<parameters>
		<label>Standard</label>
		<description>Standard Parameters</description>
		<string>
			<name>output</name>
			<label>output</label>
			<description>Name of the output file</description>
			<longflag>--output</longflag>
			<default></default>
		</string>
	</parameters>
	<parameters advanced="true">
		<label>Advanced</label>
		<description>Advanced Parameters</description>
		<integer>
			<name>Min Value</name>
			<label>Min Value</label>
			<description>The minvalue to use when sampling the image</description>
			<longflag>--minvalue</longflag>
			<default>5</default>
		</integer>
		<integer>
			<name>Max Radius</name>
			<label>Max Radius</label>
			<description>The max radius to use when sampling the image</description>
			<longflag>--maxradius</longflag>
			<default>4</default>
		</integer>
		<string-enumeration>
			<name>Debug</name>
			<label>Debug</label>
			<description>Toggles debug logging</description>
			<longflag>--debug</longflag>
			<default>false</default>
			<element>true</element>
			<element>false</element>
		</string-enumeration>
		<string-enumeration>
			<name>SlicerProgress</name>
			<label>SlicerProgress</label>
			<description>Enables progress xml outputs for Slicer</description>
			<longflag>--slicerprogress</longflag>
			<default>true</default>
			<element>true</element>
			<element>false</element>
		</string-enumeration>
	</parameters>
	<parameters>
		<label>Inputs</label>
		<description>Input Objects</description>
		<file>
			<name>Grid to Map</name>
			<label>Grid to Map</label>
			<description>Input Electrode Grid</description>
			<longflag>--input</longflag>
    			<channel>input</channel>
		</file>
		<image fileExtensions=".nii.gz,.nii">
			<name>Atlas image Image</name>
			<label>Atlas image Image</label>
			<description>Load the atlas label image</description>
			<longflag>--reference</longflag>
    			<channel>input</channel>
		</image>
	</parameters>

</executable>