biswebnode/bin/bw_diffspect.xml

A node.js implementation of BioImage Suite Web command line tools in Javascript and WebAssembly

<?xml version="1.0" encoding="utf-8"?>
<executable>
	<category>BisWEB</category>
	<title>diffSPECT</title>
	<description>Performs diff SPECT Analaysis for Epilepsy</description>
	<version>1.3.0b2</version>
	<documentation-url>https://bioimagesuiteweb.github.io/bisweb-manual</documentation-url>
	<license>GPL v2</license>
	<contributor>Xenios Papademetris</contributor>

<acknowledgements>Funding for this work was provided by the NIH Brain Initiative under grant R24 MH114805.</acknowledgements>
	<parameters>
		<label>Standard</label>
		<description>Standard Parameters</description>
		<string-enumeration>
			<name>NonLinear</name>
			<label>NonLinear</label>
			<description>If true use nonlinear registration</description>
			<longflag>--nonlinear</longflag>
			<default>false</default>
			<element>true</element>
			<element>false</element>
		</string-enumeration>
		<string-enumeration>
			<name>Native</name>
			<label>Native</label>
			<description>If true output tmap in native space</description>
			<longflag>--native</longflag>
			<default>false</default>
			<element>true</element>
			<element>false</element>
		</string-enumeration>
	</parameters>
	<parameters advanced="true">
		<label>Advanced</label>
		<description>Advanced Parameters</description>
		<string-enumeration>
			<name>SlicerProgress</name>
			<label>SlicerProgress</label>
			<description>Enables progress xml outputs for Slicer</description>
			<longflag>--slicerprogress</longflag>
			<default>true</default>
			<element>true</element>
			<element>false</element>
		</string-enumeration>
	</parameters>
	<parameters>
		<label>Inputs</label>
		<description>Input Objects</description>
		<image fileExtensions=".nii.gz,.nii">
			<name>Ictal Image</name>
			<label>Ictal Image</label>
			<description>The ictal image</description>
			<longflag>--ictal</longflag>
    			<channel>input</channel>
		</image>
		<image fileExtensions=".nii.gz,.nii">
			<name>Interictal Image</name>
			<label>Interictal Image</label>
			<description>The incter-ictal image</description>
			<longflag>--interictal</longflag>
    			<channel>input</channel>
		</image>
		<image fileExtensions=".nii.gz,.nii">
			<name>MRI Image</name>
			<label>MRI Image</label>
			<description>The MRI image</description>
			<longflag>--mri</longflag>
    			<channel>input</channel>
		</image>
	</parameters>
	<parameters>
		<label>Outputs</label>
		<description>Output Objects</description>
		<image fileExtensions=".nii.gz,.nii">
			<name>Output Image</name>
			<label>Output Image</label>
			<description>diff SPECT Tmap in Atlas Space</description>
			<longflag>--output</longflag>
    			<channel>output</channel>
		</image>
		<image fileExtensions=".nii.gz,.nii">
			<name>Output Image</name>
			<label>Output Image</label>
			<description>diff SPECT Tmap in Native Space</description>
			<longflag>--output2</longflag>
    			<channel>output</channel>
		</image>
		<file>
			<name>Results</name>
			<label>Results</label>
			<description>log file</description>
			<longflag>--logoutput</longflag>
    			<channel>output</channel>
		</file>
	</parameters>

</executable>