biswebnode/bin/bw_cropimage.xml

A node.js implementation of BioImage Suite Web command line tools in Javascript and WebAssembly

<?xml version="1.0" encoding="utf-8"?>
<executable>
	<category>BisWEB</category>
	<title>Crop</title>
	<description>This algorithm performs image cropping in 4 dimensions. Step refers to the sample rate, e.g. step=2 means every second voxel.</description>
	<version>1.3.0b2</version>
	<documentation-url>https://bioimagesuiteweb.github.io/bisweb-manual</documentation-url>
	<license>GPL v2</license>
	<contributor>Xenios Papdemetris</contributor>

<acknowledgements>Funding for this work was provided by the NIH Brain Initiative under grant R24 MH114805.</acknowledgements>
	<parameters>
		<label>Standard</label>
		<description>Standard Parameters</description>
		<integer>
			<name>I-Start</name>
			<label>I-Start</label>
			<description>The Start along the i axis.</description>
			<longflag>--i0</longflag>
			<default>0</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
		<integer>
			<name>I-End</name>
			<label>I-End</label>
			<description>The End along the i axis.</description>
			<longflag>--i1</longflag>
			<default>10</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
		<integer>
			<name>J-Start</name>
			<label>J-Start</label>
			<description>The Start along the j axis.</description>
			<longflag>--j0</longflag>
			<default>0</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
		<integer>
			<name>J-End</name>
			<label>J-End</label>
			<description>The End along the j axis.</description>
			<longflag>--j1</longflag>
			<default>10</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
		<integer>
			<name>K-Start</name>
			<label>K-Start</label>
			<description>The Start along the k axis.</description>
			<longflag>--k0</longflag>
			<default>0</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
		<integer>
			<name>K-End</name>
			<label>K-End</label>
			<description>The End along the k axis.</description>
			<longflag>--k1</longflag>
			<default>10</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
	</parameters>
	<parameters advanced="true">
		<label>Advanced</label>
		<description>Advanced Parameters</description>
		<integer>
			<name>I-Step</name>
			<label>I-Step</label>
			<description>The Step along the i axis.</description>
			<longflag>--di</longflag>
			<default>1</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
		<integer>
			<name>J-Step</name>
			<label>J-Step</label>
			<description>The Step along the j axis.</description>
			<longflag>--dj</longflag>
			<default>1</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
		<integer>
			<name>K-Step</name>
			<label>K-Step</label>
			<description>The Step along the k axis.</description>
			<longflag>--dk</longflag>
			<default>1</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
		<integer>
			<name>T-Start</name>
			<label>T-Start</label>
			<description>The Start along the t axis.</description>
			<longflag>--t0</longflag>
			<default>0</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
		<integer>
			<name>T-End</name>
			<label>T-End</label>
			<description>The End along the t axis.</description>
			<longflag>--t1</longflag>
			<default>10</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
		<integer>
			<name>T-Step</name>
			<label>T-Step</label>
			<description>The Step along the t axis.</description>
			<longflag>--dt</longflag>
			<default>1</default>
			<constraints>
				<minimum>-10</minimum>
				<maximum>200</maximum>
			</constraints>
		</integer>
		<string-enumeration>
			<name>Debug</name>
			<label>Debug</label>
			<description>Toggles debug logging</description>
			<longflag>--debug</longflag>
			<default>false</default>
			<element>true</element>
			<element>false</element>
		</string-enumeration>
		<string-enumeration>
			<name>SlicerProgress</name>
			<label>SlicerProgress</label>
			<description>Enables progress xml outputs for Slicer</description>
			<longflag>--slicerprogress</longflag>
			<default>true</default>
			<element>true</element>
			<element>false</element>
		</string-enumeration>
	</parameters>
	<parameters>
		<label>Inputs</label>
		<description>Input Objects</description>
		<image fileExtensions=".nii.gz,.nii">
			<name>Input Image</name>
			<label>Input Image</label>
			<description>The filename for the image to be processed</description>
			<longflag>--input</longflag>
    			<channel>input</channel>
		</image>
	</parameters>
	<parameters>
		<label>Outputs</label>
		<description>Output Objects</description>
		<image fileExtensions=".nii.gz,.nii">
			<name>Output Image</name>
			<label>Output Image</label>
			<description>The output image filename</description>
			<longflag>--output</longflag>
    			<channel>output</channel>
		</image>
	</parameters>

</executable>