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biojs-vis-pdbviewer

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A BioJS 2.0 component to view protein structures

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c$=Clazz.decorateAsClass(function(){ this.detailMessage=null; this.cause=null; this.stackTrace=null; Clazz.instantialize(this,arguments); },java.lang,"Throwable",null,java.io.Serializable); Clazz.prepareFields(c$,function(){ this.cause=this; }); Clazz.makeConstructor(c$, function(){ this.fillInStackTrace(); }); Clazz.makeConstructor(c$, function(message){ this.fillInStackTrace(); this.detailMessage=message; },"~S"); Clazz.makeConstructor(c$, function(message,cause){ this.fillInStackTrace(); this.detailMessage=message; this.cause=cause; },"~S,Throwable"); Clazz.makeConstructor(c$, function(cause){ this.fillInStackTrace(); this.detailMessage=(cause==null?null:cause.toString()); this.cause=cause; },"Throwable"); Clazz.defineMethod(c$,"getMessage", function(){ { if(typeof this.message!="undefined"){ return this.message; } }return this.detailMessage; }); Clazz.defineMethod(c$,"getLocalizedMessage", function(){ return this.getMessage(); }); Clazz.defineMethod(c$,"getCause", function(){ return(this.cause===this?null:this.cause); }); Clazz.defineMethod(c$,"initCause", function(cause){ if(this.cause!==this)throw new IllegalStateException("Can't overwrite cause"); if(cause===this)throw new IllegalArgumentException("Self-causation not permitted"); this.cause=cause; return this; },"Throwable"); Clazz.overrideMethod(c$,"toString", function(){ var s=this.getClass().getName(); var message=this.getLocalizedMessage(); return(message!=null)?(s+": "+message):s; }); Clazz.defineMethod(c$,"printStackTrace", function(){ System.err.println(this); for(var i=0;i<this.stackTrace.length;i++){ var t=this.stackTrace[i]; var x=t.methodName.indexOf("("); var n=t.methodName.substring(0,x).replace(/\s+/g,""); if(n!="construct"||t.nativeClazz==null ||Clazz.getInheritedLevel(t.nativeClazz,Throwable)<0){ System.err.println(t); } } }); Clazz.defineMethod(c$,"printStackTrace", function(s){ this.printStackTrace(); },"java.io.PrintStream"); Clazz.defineMethod(c$,"printStackTrace", function(s){ this.printStackTrace(); },"java.io.PrintWriter"); Clazz.defineMethod(c$,"fillInStackTrace", function(){ this.stackTrace=new Array(); var caller=arguments.callee.caller; var superCaller=null; var callerList=new Array(); var index=Clazz.callingStackTraces.length-1; var noLooping=true; while(index>-1||caller!=null){ var clazzName=null; var nativeClazz=null; if(!noLooping||caller==Clazz.tryToSearchAndExecute||caller==Clazz.superCall||caller==null){ if(index<0){ break; } noLooping=true; superCaller=Clazz.callingStackTraces[index].caller; nativeClazz=Clazz.callingStackTraces[index].owner; index--; }else{ superCaller=caller; if(superCaller.claxxOwner!=null){ nativeClazz=superCaller.claxxOwner; }else if(superCaller.exClazz!=null){ nativeClazz=superCaller.exClazz; } } var st=new StackTraceElement( ((nativeClazz!=null&&nativeClazz.__CLASS_NAME__.length!=0)? nativeClazz.__CLASS_NAME__:"anonymous"), ((superCaller.exName==null)?"anonymous":superCaller.exName) +" ("+Clazz.getParamsType(superCaller.arguments)+")", null,-1); st.nativeClazz=nativeClazz; this.stackTrace[this.stackTrace.length]=st; for(var i=0;i<callerList.length;i++){ if(callerList[i]==superCaller){ var st=new StackTraceElement("lost","missing",null,-3); st.nativeClazz=null; this.stackTrace[this.stackTrace.length]=st; noLooping=false; } } if(superCaller!=null){ callerList[callerList.length]=superCaller; } caller=superCaller.arguments.callee.caller; } Clazz.initializingException=false; return this; }); Clazz.defineMethod(c$,"setStackTrace", function(stackTrace){ var defensiveCopy=stackTrace.clone(); for(var i=0;i<defensiveCopy.length;i++)if(defensiveCopy[i]==null)throw new NullPointerException("stackTrace["+i+"]"); this.stackTrace=defensiveCopy; },"~A");