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biojs-vis-pdbviewer

Version:

A BioJS 2.0 component to view protein structures

github.com/sillitoe/biojs-vis-pdbviewer

sillitoe/biojs-vis-pdbviewer

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if(0<=c){var b=a.substring(c);a=a.substring(0,c);if(0<=b.indexOf("current"))return a=new JU.SB,c=this.htMenus.get(this.menuName),this.menuGetAsText(a,0,c,"PopupMenu"),a.toString()}return this.appGetMenuAsString(a)},"~S");b(c$,"menuGetAsText",function(a,c,b,d){b=b.getComponents();for(var f=null,g=null,e=null,h="S",k=0;k<b.length;k++){var j=this.helper.getSwingComponent(b[k]),l=this.helper.getItemType(j);switch(l){case 4:h="M";d=j.getName();f="enabled:"+j.isEnabled();e=j.getText();g=null;break;case 0:h= "S";f=g=e=null;break;default:h="I";f="enabled:"+j.isEnabled();if(2==l||3==l)f+=";checked:"+j.isSelected();g=this.appFixScript(j.getName(),j.getActionCommand());d=j.getName();e=j.getText()}J.popup.GenericSwingPopup.addItemText(a,h,c,d,e,g,f);2==l&&this.menuGetAsText(a,c+1,this.helper.getSwingComponent(j.getPopupMenu()),d)}},"JU.SB,~N,javajs.api.SC,~S");c$.addItemText=b(c$,"addItemText",function(a,c,b,d,f,g,e){a.appendC(c).appendI(b).appendC("\t").append(d);null==f?a.append(".\n"):a.append("\t").append(f).append("\t").append(null== g||0==g.length?"-":g).append("\t").append(e).append("\n")},"JU.SB,~S,~N,~S,~S,~S,~S");c$.convertToMegabytes=b(c$,"convertToMegabytes",function(a){9223372036854251E3>=a&&(a+=524288);return u(a/1048576)},"~N")});d("J.popup");h(null,"J.popup.PopupResource",["java.io.BufferedReader","$.StringReader","java.util.Properties","JU.SB"],function(){c$=l(function(){this.words=this.structure=null;j(this,arguments)},J.popup,"PopupResource");k(c$,function(a,b){this.structure=new java.util.Properties;this.words= new java.util.Properties;this.buildStructure(a);this.localize(null!=a,b)},"~S,java.util.Properties");b(c$,"getStructure",function(a){return this.structure.getProperty(a)},"~S");b(c$,"getWord",function(a){var b=this.words.getProperty(a);return null==b?a:b},"~S");b(c$,"setStructure",function(a,b){var d=new java.io.BufferedReader(new java.io.StringReader(a)),e,f;try{for(;null!=(e=d.readLine());)if(!(0==e.length||"#"==e.charAt(0))){f=e.indexOf("=");0>f&&(f=e.length,e+="=");var g=e.substring(0,f).trim(), h=e.substring(f+1).trim(),j=null;if(0<=(f=g.indexOf("|")))j=g.substring(f+1).trim(),g=g.substring(0,f).trim();0!=g.length&&(0<h.length&&this.structure.setProperty(g,h),null!=j&&0<j.length&&this.words.setProperty(g,null==b?j:b.translate(j)))}}catch(k){if(!t(k,Exception))throw k;}try{d.close()}catch(l){if(!t(l,Exception))throw l;}},"~S,J.api.Translator");b(c$,"addItems",function(a){for(var b="",d=0;d<a.length;d++){var e=a[d],f=e[1];null==f&&(f=b);b=f;this.structure.setProperty(e[0],f)}},"~A");b(c$, "localize",function(a,b){for(var d=this.getWordContents(),e=0;e<d.length;e++){var f=d[e++],g=this.words.getProperty(f);null==g&&(g=d[e]);this.words.setProperty(f,g);null!=b&&0<=f.indexOf("Text")&&b.setProperty(f,g)}},"~B,java.util.Properties");b(c$,"getStuctureAsText",function(a,b,d){return"# "+this.getMenuName()+".mnu "+a+"\n\n# Part I -- Menu Structure\n# ------------------------\n\n"+this.dumpStructure(b)+"\n\n# Part II -- Key Definitions\n# --------------------------\n\n"+this.dumpStructure(d)+ "\n\n# Part III -- Word Translations\n# -----------------------------\n\n"+this.dumpWords()},"~S,~A,~A");b(c$,"dumpWords",function(){for(var a=this.getWordContents(),b=new JU.SB,d=0;d<a.length;d++){var e=a[d++];null==this.structure.getProperty(e)&&b.append(e).append(" | ").append(a[d]).appendC("\n")}return b.toString()});b(c$,"dumpStructure",function(a){for(var b="",d=new JU.SB,e=0;e<a.length;e++){var f=a[e][0],g=this.words.getProperty(f);null!=g&&(f+=" | "+g);d.append(f).append(" = ").append(null== a[e][1]?b:b=a[e][1]).appendC("\n")}return d.toString()},"~A")});d("J.popup");h(["J.popup.PopupHelper"],"J.popup.JSSwingPopupHelper","javajs.swing.ButtonGroup $.JCheckBoxMenuItem $.JMenu $.JMenuItem $.JPopupMenu $.JRadioButtonMenuItem".split(" "),function(){c$=l(function(){this.buttonGroup=this.popup=null;j(this,arguments)},J.popup,"JSSwingPopupHelper",null,J.popup.PopupHelper);k(c$,function(a){this.popup=a},"javajs.api.GenericMenuInterface");e(c$,"menuCreatePopup",function(a,b){var d=new javajs.swing.JPopupMenu(a); d.setInvoker(b);return d},"~S,~O");e(c$,"getMenu",function(){return new javajs.swing.JMenu},"~S");e(c$,"getMenuItem",function(a){return new javajs.swing.JMenuItem(a)},"~S");e(c$,"getRadio",function(){return new javajs.swing.JRadioButtonMenuItem},"~S");e(c$,"getCheckBox",function(){return new javajs.swing.JCheckBoxMenuItem},"~S");e(c$,"menuAddButtonGroup",function(a){null==a?this.buttonGroup=null:(null==this.buttonGroup&&(this.buttonGroup=new javajs.swing.ButtonGroup),this.buttonGroup.add(a))},"javajs.api.SC"); e(c$,"getItemType",function(a){return a.btnType},"javajs.api.SC");e(c$,"menuInsertSubMenu",function(a,b){b.setParent(a)},"javajs.api.SC,javajs.api.SC,~N");e(c$,"getSwingComponent",function(a){return a},"~O");e(c$,"menuClearListeners",function(a){null!=a&&a.disposeMenu()},"javajs.api.SC");b(c$,"itemStateChanged",function(a){this.popup.menuCheckBoxCallback(a.getSource())},"javajs.awt.event.ItemEvent");b(c$,"actionPerformed",function(a){this.popup.menuClickCallback(a.getSource(),a.getActionCommand())}, "javajs.awt.event.ActionEvent");e(c$,"getButtonGroup",function(){return this.buttonGroup})});d("J.popup");r(J.popup,"PopupHelper")})(Clazz,Clazz.newLongArray,Clazz.doubleToByte,Clazz.doubleToInt,Clazz.doubleToLong,Clazz.declarePackage,Clazz.instanceOf,Clazz.load,Clazz.instantialize,Clazz.decorateAsClass,Clazz.floatToInt,Clazz.makeConstructor,Clazz.defineEnumConstant,Clazz.exceptionOf,Clazz.newIntArray,Clazz.defineStatics,Clazz.newFloatArray,Clazz.declareType,Clazz.prepareFields,Clazz.superConstructor, Clazz.newByteArray,Clazz.declareInterface,Clazz.p0p,Clazz.pu$h,Clazz.newShortArray,Clazz.innerTypeInstance,Clazz.isClassDefined,Clazz.prepareCallback,Clazz.newArray,Clazz.castNullAs,Clazz.floatToShort,Clazz.superCall,Clazz.decorateAsType,Clazz.newBooleanArray,Clazz.newCharArray,Clazz.implementOf,Clazz.newDoubleArray,Clazz.overrideConstructor,Clazz.clone,Clazz.doubleToShort,Clazz.getInheritedLevel,Clazz.getParamsType,Clazz.isAF,Clazz.isAI,Clazz.isAS,Clazz.isASS,Clazz.isAP,Clazz.isAFloat,Clazz.isAII, Clazz.isAFF,Clazz.isAFFF,Clazz.tryToSearchAndExecute,Clazz.getStackTrace,Clazz.inheritArgs,Clazz.alert,Clazz.defineMethod,Clazz.overrideMethod,Clazz.declareAnonymous,Clazz.cloneFinals);