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biojs-vis-pdbviewer

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A BioJS 2.0 component to view protein structures

150 lines (149 loc) 3.83 kB
Clazz.declarePackage ("JU"); Clazz.load (null, "JU.GZIPHeader", ["JU.ZStream", "java.lang.IllegalArgumentException", "$.InternalError"], function () { c$ = Clazz.decorateAsClass (function () { this.text = false; this.fhcrc = false; this.time = 0; this.xflags = 0; this.os = 255; this.extra = null; this.name = null; this.comment = null; this.hcrc = 0; this.crc = 0; this.done = false; this.mtime = 0; Clazz.instantialize (this, arguments); }, JU, "GZIPHeader", null, Cloneable); Clazz.defineMethod (c$, "setModifiedTime", function (mtime) { this.mtime = mtime; }, "~N"); Clazz.defineMethod (c$, "getModifiedTime", function () { return this.mtime; }); Clazz.defineMethod (c$, "setOS", function (os) { if ((0 <= os && os <= 13) || os == 255) this.os = os; else throw new IllegalArgumentException ("os: " + os); }, "~N"); Clazz.defineMethod (c$, "getOS", function () { return this.os; }); Clazz.defineMethod (c$, "setName", function (name) { this.name = JU.ZStream.getBytes (name); }, "~S"); Clazz.defineMethod (c$, "getName", function () { if (this.name == null) return ""; try { return String.instantialize (this.name, "ISO-8859-1"); } catch (e) { if (Clazz.exceptionOf (e, java.io.UnsupportedEncodingException)) { throw new InternalError (e.toString ()); } else { throw e; } } }); Clazz.defineMethod (c$, "setComment", function (comment) { this.comment = JU.ZStream.getBytes (comment); }, "~S"); Clazz.defineMethod (c$, "getComment", function () { if (this.comment == null) return ""; try { return String.instantialize (this.comment, "ISO-8859-1"); } catch (e) { if (Clazz.exceptionOf (e, java.io.UnsupportedEncodingException)) { throw new InternalError (e.toString ()); } else { throw e; } } }); Clazz.defineMethod (c$, "setCRC", function (crc) { this.crc = crc; }, "~N"); Clazz.defineMethod (c$, "getCRC", function () { return this.crc; }); Clazz.defineMethod (c$, "put", function (d) { var flag = 0; if (this.text) { flag |= 1; }if (this.fhcrc) { flag |= 2; }if (this.extra != null) { flag |= 4; }if (this.name != null) { flag |= 8; }if (this.comment != null) { flag |= 16; }var xfl = 0; if (d.level == 1) { xfl |= 4; } else if (d.level == 9) { xfl |= 2; }d.put_short (0x8b1f); d.put_byteB (8); d.put_byteB (flag); d.put_byteB (this.mtime); d.put_byteB ((this.mtime >> 8)); d.put_byteB ((this.mtime >> 16)); d.put_byteB ((this.mtime >> 24)); d.put_byteB (xfl); d.put_byteB (this.os); if (this.extra != null) { d.put_byteB (this.extra.length); d.put_byteB ((this.extra.length >> 8)); d.put_byte (this.extra, 0, this.extra.length); }if (this.name != null) { d.put_byte (this.name, 0, this.name.length); d.put_byteB (0); }if (this.comment != null) { d.put_byte (this.comment, 0, this.comment.length); d.put_byteB (0); }}, "JU.Deflate"); Clazz.defineMethod (c$, "clone", function () { var gheader = Clazz.superCall (this, JU.GZIPHeader, "clone", []); var tmp; if (gheader.extra != null) { tmp = Clazz.newByteArray (gheader.extra.length, 0); System.arraycopy (gheader.extra, 0, tmp, 0, tmp.length); gheader.extra = tmp; }if (gheader.name != null) { tmp = Clazz.newByteArray (gheader.name.length, 0); System.arraycopy (gheader.name, 0, tmp, 0, tmp.length); gheader.name = tmp; }if (gheader.comment != null) { tmp = Clazz.newByteArray (gheader.comment.length, 0); System.arraycopy (gheader.comment, 0, tmp, 0, tmp.length); gheader.comment = tmp; }return gheader; }); Clazz.defineStatics (c$, "OS_MSDOS", 0x00, "OS_AMIGA", 0x01, "OS_VMS", 0x02, "OS_UNIX", 0x03, "OS_ATARI", 0x05, "OS_OS2", 0x06, "OS_MACOS", 0x07, "OS_TOPS20", 0x0a, "OS_WIN32", 0x0b, "OS_VMCMS", 0x04, "OS_ZSYSTEM", 0x08, "OS_CPM", 0x09, "OS_QDOS", 0x0c, "OS_RISCOS", 0x0d, "OS_UNKNOWN", 0xff); });