Clazz.declarePackage ("JS");
Clazz.load (["java.util.Hashtable"], "JS.T", ["java.lang.Boolean", "java.util.Arrays", "JU.AU", "$.Lst", "JU.Logger"], function () {
c$ = Clazz.decorateAsClass (function () {
this.tok = 0;
this.value = null;
this.intValue = 2147483647;
Clazz.instantialize (this, arguments);
}, JS, "T");
c$.t = Clazz.defineMethod (c$, "t", 
function (tok) {
var token =  new JS.T ();
token.tok = tok;
return token;
}, "~N");
c$.tv = Clazz.defineMethod (c$, "tv", 
function (tok, intValue, value) {
var token = JS.T.t (tok);
token.intValue = intValue;
token.value = value;
return token;
}, "~N,~N,~O");
c$.o = Clazz.defineMethod (c$, "o", 
function (tok, value) {
var token = JS.T.t (tok);
token.value = value;
return token;
}, "~N,~O");
c$.n = Clazz.defineMethod (c$, "n", 
function (tok, intValue) {
var token = JS.T.t (tok);
token.intValue = intValue;
return token;
}, "~N,~N");
c$.i = Clazz.defineMethod (c$, "i", 
function (intValue) {
var token = JS.T.t (2);
token.intValue = intValue;
return token;
}, "~N");
c$.tokAttr = Clazz.defineMethod (c$, "tokAttr", 
function (a, b) {
return (a & b) == (b & b);
}, "~N,~N");
c$.tokAttrOr = Clazz.defineMethod (c$, "tokAttrOr", 
function (a, b1, b2) {
return (a & b1) == (b1 & b1) || (a & b2) == (b2 & b2);
}, "~N,~N,~N");
c$.getPrecedence = Clazz.defineMethod (c$, "getPrecedence", 
function (tokOperator) {
return ((tokOperator >> 4) & 0xF);
}, "~N");
c$.getMaxMathParams = Clazz.defineMethod (c$, "getMaxMathParams", 
function (tokCommand) {
return ((tokCommand >> 9) & 0x3);
}, "~N");
c$.addToken = Clazz.defineMethod (c$, "addToken", 
function (ident, token) {
JS.T.tokenMap.put (ident, token);
}, "~S,JS.T");
c$.getTokenFromName = Clazz.defineMethod (c$, "getTokenFromName", 
function (name) {
if (name == null) System.out.println ("???");
return JS.T.tokenMap.get (name);
}, "~S");
c$.getTokFromName = Clazz.defineMethod (c$, "getTokFromName", 
function (name) {
var token = JS.T.getTokenFromName (name.toLowerCase ());
return (token == null ? 0 : token.tok);
}, "~S");
c$.nameOf = Clazz.defineMethod (c$, "nameOf", 
function (tok) {
for (var token, $token = JS.T.tokenMap.values ().iterator (); $token.hasNext () && ((token = $token.next ()) || true);) {
if (token.tok == tok) return "" + token.value;
}
return "0x" + Integer.toHexString (tok);
}, "~N");
Clazz.overrideMethod (c$, "toString", 
function () {
return this.toString2 ();
});
Clazz.defineMethod (c$, "toString2", 
function () {
return "Token[" + JS.T.astrType[this.tok < 16 ? this.tok : 16] + "(" + (this.tok % (512)) + "/0x" + Integer.toHexString (this.tok) + ")" + ((this.intValue == 2147483647) ? "" : " intValue=" + this.intValue + "(0x" + Integer.toHexString (this.intValue) + ")") + ((this.value == null) ? "" : Clazz.instanceOf (this.value, String) ? " value=\"" + this.value + "\"" : " value=" + this.value) + "]";
});
c$.getCommandSet = Clazz.defineMethod (c$, "getCommandSet", 
function (strBegin) {
var cmds = "";
var htSet =  new java.util.Hashtable ();
var nCmds = 0;
var s = (strBegin == null || strBegin.length == 0 ? null : strBegin.toLowerCase ());
var isMultiCharacter = (s != null && s.length > 1);
for (var entry, $entry = JS.T.tokenMap.entrySet ().iterator (); $entry.hasNext () && ((entry = $entry.next ()) || true);) {
var name = entry.getKey ();
var token = entry.getValue ();
if ((token.tok & 4096) != 0 && (s == null || name.indexOf (s) == 0) && (isMultiCharacter || (token.value).equals (name))) htSet.put (name, Boolean.TRUE);
}
for (var entry, $entry = htSet.entrySet ().iterator (); $entry.hasNext () && ((entry = $entry.next ()) || true);) {
var name = entry.getKey ();
if (name.charAt (name.length - 1) != 's' || !htSet.containsKey (name.substring (0, name.length - 1))) cmds += (nCmds++ == 0 ? "" : ";") + name;
}
return cmds;
}, "~S");
c$.getAtomPropertiesLike = Clazz.defineMethod (c$, "getAtomPropertiesLike", 
function (type) {
type = type.toLowerCase ();
var v =  new JU.Lst ();
var isAll = (type.length == 0);
for (var entry, $entry = JS.T.tokenMap.entrySet ().iterator (); $entry.hasNext () && ((entry = $entry.next ()) || true);) {
var name = entry.getKey ();
if (name.charAt (0) == '_') continue;
var token = entry.getValue ();
if (JS.T.tokAttr (token.tok, 1078984704) && (isAll || name.toLowerCase ().startsWith (type))) {
if (isAll || !(token.value).toLowerCase ().startsWith (type)) token = JS.T.o (token.tok, name);
v.addLast (token);
}}
return (v.size () == 0 ? null : v);
}, "~S");
c$.getTokensLike = Clazz.defineMethod (c$, "getTokensLike", 
function (type) {
var attr = (type.equals ("setparam") ? 536870912 : type.equals ("misc") ? 1073741824 : type.equals ("mathfunc") ? 135266304 : 4096);
var notattr = (attr == 536870912 ? 1610612736 : 0);
var v =  new JU.Lst ();
for (var entry, $entry = JS.T.tokenMap.entrySet ().iterator (); $entry.hasNext () && ((entry = $entry.next ()) || true);) {
var name = entry.getKey ();
var token = entry.getValue ();
if (JS.T.tokAttr (token.tok, attr) && (notattr == 0 || !JS.T.tokAttr (token.tok, notattr))) v.addLast (name);
}
var a = v.toArray ( new Array (v.size ()));
java.util.Arrays.sort (a);
return a;
}, "~S");
c$.getSettableTokFromString = Clazz.defineMethod (c$, "getSettableTokFromString", 
function (s) {
var tok = JS.T.getTokFromName (s);
return (tok != 0 && JS.T.tokAttr (tok, 2048) && !JS.T.tokAttr (tok, 1141899264) ? tok : 0);
}, "~S");
c$.completeCommand = Clazz.defineMethod (c$, "completeCommand", 
function (map, isSet, asCommand, str, n) {
if (map == null) map = JS.T.tokenMap;
 else asCommand = false;
var v =  new JU.Lst ();
str = str.toLowerCase ();
for (var name, $name = map.keySet ().iterator (); $name.hasNext () && ((name = $name.next ()) || true);) {
if (!name.startsWith (str)) continue;
var tok = JS.T.getTokFromName (name);
if (asCommand ? JS.T.tokAttr (tok, 4096) : isSet ? JS.T.tokAttr (tok, 536870912) && !JS.T.tokAttr (tok, 1610612736) : true) v.addLast (name);
}
return JU.AU.sortedItem (v, n);
}, "java.util.Map,~B,~B,~S,~N");
c$.getParamType = Clazz.defineMethod (c$, "getParamType", 
function (tok) {
if (!JS.T.tokAttr (tok, 536870912)) return 0;
return tok & 662700032;
}, "~N");
c$.getTokensType = Clazz.defineMethod (c$, "getTokensType", 
function (map, attr) {
for (var e, $e = JS.T.tokenMap.entrySet ().iterator (); $e.hasNext () && ((e = $e.next ()) || true);) {
var t = e.getValue ();
if (JS.T.tokAttr (t.tok, attr)) map.put (e.getKey (), e.getValue ());
}
}, "java.util.Map,~N");
c$.isIDcmd = Clazz.defineMethod (c$, "isIDcmd", 
function (cmdtok) {
switch (cmdtok) {
case 135180:
case 135176:
case 135174:
case 135188:
case 135402505:
return true;
default:
return false;
}
}, "~N");
Clazz.defineMethod (c$, "equals", 
function (o) {
if (!(Clazz.instanceOf (o, JS.T))) return false;
var t = o;
if (this.tok == t.tok) return (t.intValue == this.intValue && (this.tok == 2 || t.value.equals (this.value)));
switch (this.tok) {
case 2:
return (t.tok == 3 && (t.value).floatValue () == this.intValue);
case 3:
return (t.tok == 2 && (this.value).floatValue () == t.intValue);
default:
return false;
}
}, "~O");
Clazz.defineStatics (c$,
"astrType", null);
{
JS.T.astrType = "nada identifier integer decimal string seqcode hash array point point4 bitset matrix3f matrix4f array hash bytearray keyword".$plit (" ");
}Clazz.defineStatics (c$,
"nada", 0,
"integer", 2,
"decimal", 3,
"string", 4,
"seqcode", 5,
"hash", 6,
"varray", 7,
"point3f", 8,
"point4f", 9,
"bitset", 10,
"matrix3f", 11,
"matrix4f", 12,
"listf", 13,
"context", 14,
"barray", 15,
"keyword", 16,
"setparam", 536870912,
"misc", 1073741824,
"deprecatedparam", 1610612736,
"identifier", 1073741824,
"scriptCommand", 4096,
"atomExpressionCommand", 12288,
"implicitStringCommand", 20480,
"mathExpressionCommand", 36864,
"flowCommand", 102400,
"shapeCommand", 135168,
"noArgs", 262144,
"defaultON", 524288,
"expression", 1048576,
"predefinedset", 3145728,
"atomproperty", 1078984704,
"strproperty", 1087373312,
"intproperty", 1095761920,
"floatproperty", 1112539136,
"PROPERTYFLAGS", 1137704960,
"strparam", 545259520,
"intparam", 553648128,
"floatparam", 570425344,
"booleanparam", 603979776,
"paramTypes", 662700032,
"mathproperty", 1141899264,
"mathfunc", 135266304,
"mathop", 269484032,
"comparator", 269484288,
"center", 12289,
"define", 1060866,
"$delete", 12291,
"display", 1610625028,
"fixed", 1060869,
"hide", 12294,
"restrict", 12295,
"subset", 3158024,
"zap", 1060873,
"print", 36865,
"returncmd", 36866,
"set", 1085443,
"$var", 36868,
"log", 36869,
"throwcmd", 36870,
"echo", 537022465,
"help", 20482,
"hover", 544771,
"message", 20485,
"pause", 20487,
"elseif", 102402,
"elsecmd", 364547,
"endifcmd", 364548,
"whilecmd", 102406,
"breakcmd", 102407,
"continuecmd", 102408,
"end", 1150985,
"switchcmd", 102410,
"casecmd", 102411,
"catchcmd", 102412,
"defaultcmd", 102413,
"trycmd", 364558,
"animation", 4097,
"assign", 4098,
"background", 1610616835,
"bind", 4100,
"bondorder", 4101,
"calculate", 4102,
"capture", 4103,
"cd", 1069064,
"centerat", 4105,
"connect", 4106,
"console", 528395,
"delay", 528397,
"depth", 554176526,
"exit", 266255,
"exitjmol", 266256,
"font", 4114,
"frame", 4115,
"gotocmd", 20500,
"hbond", 1612189718,
"history", 1610616855,
"initialize", 266264,
"invertSelected", 4121,
"loop", 528410,
"mapproperty", 1052700,
"minimize", 4126,
"move", 4128,
"moveto", 4130,
"navigate", 4131,
"parallel", 102436,
"plot", 4133,
"process", 102439,
"quit", 266281,
"ramachandran", 1052714,
"redomove", 4139,
"refresh", 266284,
"reset", 4141,
"restore", 4142,
"resume", 4143,
"rotate", 528432,
"rotateSelected", 4145,
"save", 4146,
"selectionhalos", 1611141171,
"slab", 554176565,
"spin", 1611141175,
"ssbond", 1611141176,
"step", 266298,
"stereo", 528443,
"sync", 4156,
"timeout", 536875070,
"translate", 4160,
"translateSelected", 4162,
"unbind", 4164,
"undomove", 4165,
"vibration", 4166,
"zoom", 4168,
"zoomTo", 4170,
"axes", 1611272194,
"cgo", 135174,
"dipole", 135175,
"draw", 135176,
"frank", 1611272202,
"isosurface", 135180,
"lcaocartoon", 135182,
"measurements", 537006096,
"mo", 1183762,
"pmesh", 135188,
"plot3d", 135190,
"polyhedra", 135192,
"struts", 1708058,
"unitcell", 1614417948,
"vector", 135198,
"wireframe", 659488,
"expressionBegin", 1048577,
"expressionEnd", 1048578,
"all", 1048579,
"branch", 1048580,
"coord", 1048581,
"dollarsign", 1048582,
"per", 1048583,
"perper", 1048584,
"isaromatic", 1048585,
"leftbrace", 1048586,
"none", 1048587,
"off", 1048588,
"on", 1048589,
"rightbrace", 1048590,
"semicolon", 1048591,
"spec_alternate", 1048607,
"spec_atom", 1048608,
"spec_chain", 1048609,
"spec_model", 1048610,
"spec_model2", 1048611,
"spec_name_pattern", 1048612,
"spec_resid", 1048613,
"spec_seqcode", 1048614,
"spec_seqcode_range", 1048615,
"amino", 3145730,
"dna", 3145732,
"hetero", 1613758470,
"helixalpha", 3145735,
"helix310", 3145736,
"helixpi", 3145738,
"hydrogen", 1613758476,
"leadatom", 3145741,
"nucleic", 3145742,
"protein", 3145744,
"purine", 3145746,
"pyrimidine", 3145748,
"rna", 3145750,
"solvent", 1613758488,
"sidechain", 3145754,
"surface", 3145756,
"thismodel", 3145758,
"sheet", 3145760,
"spine", 3145762,
"carbohydrate", 3145764,
"clickable", 3145766,
"displayed", 3145768,
"hidden", 3145770,
"specialposition", 3145772,
"visible", 3145774,
"basemodel", 3145776,
"nonequivalent", 3145778,
"leftparen", 269484048,
"rightparen", 269484049,
"opIf", 806354977,
"colon", 269484066,
"comma", 269484080,
"leftsquare", 269484096,
"rightsquare", 269484097,
"opOr", 269484112,
"opXor", 269484113,
"opToggle", 269484114,
"opAnd", 269484128,
"opNot", 269484144,
"opAND", 269484160,
"opGT", 269484432,
"opGE", 269484433,
"opLE", 269484434,
"opLT", 269484435,
"opEQ", 269484436,
"opNE", 269484437,
"opLIKE", 269484438,
"minus", 269484192,
"plus", 269484193,
"divide", 269484208,
"times", 269484209,
"percent", 269484210,
"leftdivide", 269484211,
"unaryMinus", 269484224,
"minusMinus", 269484225,
"plusPlus", 269484226,
"timestimes", 269484227,
"propselector", 269484241,
"andequals", 269484242,
"minmaxmask", 480,
"min", 32,
"max", 64,
"average", 96,
"sum", 128,
"sum2", 160,
"stddev", 192,
"selectedfloat", 224,
"allfloat", 256,
"settable", 2048,
"atoms", 1141899265,
"bonds", 1678770178,
"length", 1141899267,
"lines", 1141899268,
"reverse", 1141899269,
"size", 1141899270,
"type", 1141899272,
"boundbox", 1679429641,
"xyz", 1146095626,
"fracxyz", 1146095627,
"screenxyz", 1146095628,
"fuxyz", 1146095629,
"unitxyz", 1146093582,
"vibxyz", 1146095631,
"w", 1141899280,
"keys", 1141899281,
"occupancy", 1129318401,
"radius", 1666189314,
"structure", 1641025539,
"atomtype", 1087375361,
"atomname", 1087375362,
"altloc", 1087373315,
"chain", 1087373316,
"element", 1087375365,
"group", 1087373318,
"group1", 1087373319,
"sequence", 1087373320,
"identify", 1087373321,
"insertion", 1087373322,
"shape", 1087373323,
"strucid", 1087373324,
"symbol", 1087375373,
"symmetry", 1089470478,
"atomno", 1095763969,
"atomid", 1095761922,
"atomindex", 1095761923,
"bondcount", 1095761924,
"cell", 1095761925,
"centroid", 1095761926,
"chainno", 1095761927,
"configuration", 1095766024,
"elemisono", 1095761929,
"elemno", 1095763978,
"formalcharge", 1632634891,
"groupid", 1095761932,
"groupindex", 1095761933,
"model", 1095766030,
"modelindex", 1095761935,
"molecule", 1095761936,
"polymer", 1095761937,
"polymerlength", 1095761938,
"resno", 1095761939,
"seqid", 1095761940,
"site", 1095761941,
"strucno", 1095761942,
"valence", 1095763991,
"adpmax", 1112539137,
"adpmin", 1112539138,
"chemicalshift", 1112539139,
"covalentradius", 1112539140,
"eta", 1112539141,
"magneticshielding", 1112539142,
"mass", 1112539143,
"omega", 1112539144,
"phi", 1112539145,
"psi", 1112539146,
"screenx", 1112539147,
"screeny", 1112539148,
"screenz", 1112539149,
"straightness", 1112539150,
"surfacedistance", 1112539151,
"theta", 1112539152,
"unitx", 1112539153,
"unity", 1112539154,
"unitz", 1112539155,
"vectorscale", 1649410049,
"atomx", 1112541185,
"atomy", 1112541186,
"atomz", 1112541187,
"fracx", 1112541188,
"fracy", 1112541189,
"fracz", 1112541190,
"fux", 1112541191,
"fuy", 1112541192,
"fuz", 1112541193,
"bondingradius", 1112541195,
"partialcharge", 1112541196,
"temperature", 1112541199,
"vibx", 1112541202,
"viby", 1112541203,
"vibz", 1112541204,
"x", 1112541205,
"y", 1112541206,
"z", 1112541207,
"vanderwaals", 1649412120,
"property", 1716520985,
"hydrophobicity", 1114638362,
"selected", 1114638363,
"backbone", 1115297793,
"cartoon", 1113200642,
"dots", 1113198595,
"ellipsoid", 1113198596,
"geosurface", 1113198597,
"halo", 1113200646,
"meshRibbon", 1113200647,
"ribbon", 1113200649,
"rocket", 1113200650,
"spacefill", 1113200651,
"star", 1113200652,
"strands", 1650071565,
"trace", 1113200654,
"angle", 135266305,
"array", 135266306,
"axisangle", 135266307,
"color", 1766856708,
"compare", 135270405,
"connected", 135266310,
"data", 135270408,
"format", 1288701959,
"$function", 135368713,
"getproperty", 1276121098,
"helix", 137363467,
"label", 1826248716,
"measure", 1746538509,
"now", 135266318,
"plane", 135266319,
"point", 135266320,
"pop", 1276383249,
"quaternion", 135270418,
"sort", 1276117011,
"count", 1276117012,
"within", 135266325,
"write", 135270422,
"cache", 135270423,
"tensor", 1276117016,
"modulation", 1276121113,
"acos", 135266819,
"sin", 135266820,
"cos", 135266821,
"sqrt", 135266822,
"file", 1229984263,
"forcmd", 135369224,
"ifcmd", 135369225,
"abs", 135266826,
"javascript", 135287308,
"eval", 135266829,
"show", 135270926,
"div", 1276117504,
"dot", 1276117505,
"join", 1276117506,
"mul", 1276117507,
"mul3", 1276117508,
"split", 1276117510,
"sub", 1276117511,
"trim", 1276117512,
"volume", 1313866249,
"col", 1276117514,
"row", 1276117515,
"cross", 135267329,
"load", 135271426,
"random", 135267332,
"script", 135271429,
"substructure", 1238369286,
"search", 135267335,
"smiles", 135267336,
"contact", 135402505,
"add", 1276118017,
"distance", 1276118018,
"push", 1276384259,
"hkl", 135267841,
"intersection", 135267842,
"prompt", 135304707,
"select", 135280132,
"bin", 1276118529,
"symop", 1297090050,
"find", 1276118531,
"$in", 1276116993,
"replace", 1276120578,
"bondmode", 1610612737,
"fontsize", 1610612738,
"measurementnumbers", 1610612739,
"scale3d", 1610612740,
"togglelabel", 1610612741,
"backgroundmodel", 536870914,
"debug", 536870916,
"defaultlattice", 536870918,
"highlight", 536870920,
"showscript", 536870922,
"specular", 536870924,
"trajectory", 536870926,
"undo", 536870928,
"usercolorscheme", 536870930,
"animationmode", 545259521,
"appletproxy", 545259522,
"atomtypes", 545259524,
"axescolor", 545259526,
"axis1color", 545259528,
"axis2color", 545259530,
"axis3color", 545259532,
"backgroundcolor", 545259534,
"boundboxcolor", 545259536,
"currentlocalpath", 545259538,
"dataseparator", 545259540,
"defaultanglelabel", 545259542,
"defaultlabelpdb", 545259543,
"defaultlabelxyz", 545259544,
"defaultcolorscheme", 545259545,
"defaultdirectory", 545259546,
"defaultdistancelabel", 545259547,
"defaultdropscript", 545259548,
"defaultloadfilter", 545259549,
"defaultloadscript", 545259550,
"defaults", 545259552,
"defaulttorsionlabel", 545259554,
"defaultvdw", 545259555,
"edsurlcutoff", 545259556,
"edsurlformat", 545259557,
"energyunits", 545259558,
"filecachedirectory", 545259559,
"forcefield", 545259560,
"helppath", 545259561,
"hoverlabel", 545259562,
"language", 545259564,
"loadformat", 545259565,
"loadligandformat", 545259566,
"logfile", 545259567,
"measurementunits", 545259568,
"nmrpredictformat", 545259569,
"nmrurlformat", 545259570,
"pathforallfiles", 545259571,
"picking", 545259572,
"pickingstyle", 545259574,
"picklabel", 545259576,
"propertycolorscheme", 545259578,
"quaternionframe", 545259580,
"smilesurlformat", 545259582,
"smiles2dimageformat", 545259584,
"unitcellcolor", 545259586,
"axesscale", 570425346,
"bondtolerance", 570425348,
"cameradepth", 570425350,
"defaultdrawarrowscale", 570425352,
"defaulttranslucent", 570425354,
"dipolescale", 570425355,
"drawfontsize", 570425356,
"ellipsoidaxisdiameter", 570425357,
"exportscale", 570425358,
"gestureswipefactor", 570425359,
"hbondsangleminimum", 570425360,
"hbondsdistancemaximum", 570425361,
"hoverdelay", 570425362,
"loadatomdatatolerance", 570425363,
"minbonddistance", 570425364,
"minimizationcriterion", 570425365,
"modulationscale", 570425366,
"mousedragfactor", 570425367,
"mousewheelfactor", 570425368,
"multiplebondradiusfactor", 570425369,
"multiplebondspacing", 570425370,
"navfps", 570425371,
"navigationdepth", 570425372,
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if (sTokens.length != iTokens.length) JU.Logger.error ("sTokens.length (" + sTokens.length + ") != iTokens.length! (" + iTokens.length + ")");
n = sTokens.length;
for (var i = 0; i < n; i++) {
sTok = sTokens[i];
lcase = sTok.toLowerCase ();
var t = iTokens[i];
tokenThis = tokenLast = (t == -1 ? tokenLast : JS.T.o (t, sTok));
if (JS.T.tokenMap.get (lcase) != null) JU.Logger.error ("duplicate token definition:" + lcase);
JS.T.tokenMap.put (lcase, tokenThis);
}
sTokens = null;
iTokens = null;
}});