biojs-vis-pdbviewer/external/jmol-14.2.4/jsmol/j2s/J/io/DOMReader.js

A BioJS 2.0 component to view protein structures

Clazz.declarePackage ("J.io");
c$ = Clazz.decorateAsClass (function () {
this.fm = null;
this.vwr = null;
this.aDOMNode = null;
this.atomSetCollection = null;
this.htParams = null;
Clazz.instantialize (this, arguments);
}, J.io, "DOMReader");
Clazz.prepareFields (c$, function () {
this.aDOMNode =  new Array (1);
});
Clazz.makeConstructor (c$, 
function () {
});
Clazz.defineMethod (c$, "set", 
function (fileManager, vwr, DOMNode, htParams) {
this.fm = fileManager;
this.vwr = vwr;
this.aDOMNode[0] = DOMNode;
this.htParams = htParams;
}, "JV.FileManager,JV.Viewer,~O,java.util.Map");
Clazz.defineMethod (c$, "run", 
function () {
var info = this.vwr.apiPlatform.getJsObjectInfo (this.aDOMNode, null, null);
if (info != null) this.htParams.put ("nameSpaceInfo", info);
this.atomSetCollection = this.vwr.getModelAdapter ().getAtomSetCollectionFromDOM (this.aDOMNode, this.htParams);
if (Clazz.instanceOf (this.atomSetCollection, String)) return;
this.vwr.zap (false, true, false);
this.fm.setFileInfo (["JSNode"]);
});