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biojs-vis-pdbviewer

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A BioJS 2.0 component to view protein structures

github.com/sillitoe/biojs-vis-pdbviewer

sillitoe/biojs-vis-pdbviewer

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Clazz.declarePackage ("J.api"); Clazz.load (null, "J.api.JmolViewer", ["java.lang.Boolean", "java.util.Hashtable"], function () { c$ = Clazz.decorateAsClass (function () { this.menuStructure = null; this.apiPlatform = null; Clazz.instantialize (this, arguments); }, J.api, "JmolViewer"); c$.allocateViewer = Clazz.defineMethod (c$, "allocateViewer", function (display, modelAdapter, fullName, documentBase, codeBase, commandOptions, statusListener, implementedPlatform) { var info = new java.util.Hashtable (); if (display != null) info.put ("display", display); if (modelAdapter != null) info.put ("adapter", modelAdapter); if (statusListener != null) info.put ("statuslistener", statusListener); if (implementedPlatform != null) info.put ("platform", implementedPlatform); if (commandOptions != null) info.put ("options", commandOptions); if (fullName != null) info.put ("fullname", fullName); if (documentBase != null) info.put ("documentbase", documentBase); if (codeBase != null) info.put ("codebase", codeBase); return new JV.Viewer (info); }, "~O,J.api.JmolAdapter,~S,java.net.URL,java.net.URL,~S,J.api.JmolStatusListener,javajs.api.GenericPlatform"); c$.allocateViewer = Clazz.defineMethod (c$, "allocateViewer", function (container, jmolAdapter) { return J.api.JmolViewer.allocateViewer (container, jmolAdapter, null, null, null, null, null, null); }, "~O,J.api.JmolAdapter"); c$.allocateViewer = Clazz.defineMethod (c$, "allocateViewer", function (display, modelAdapter, fullName, documentBase, codeBase, commandOptions, statusListener) { return J.api.JmolViewer.allocateViewer (display, modelAdapter, fullName, documentBase, codeBase, commandOptions, statusListener, null); }, "~O,J.api.JmolAdapter,~S,java.net.URL,java.net.URL,~S,J.api.JmolStatusListener"); Clazz.defineMethod (c$, "setConsole", function (console) { this.getProperty ("DATA_API", "getAppConsole", console); }, "J.api.JmolAppConsoleInterface"); c$.getJmolVersion = Clazz.defineMethod (c$, "getJmolVersion", function () { return JV.Viewer.getJmolVersion (); }); c$.checkOption = Clazz.defineMethod (c$, "checkOption", function (vwr, option) { var testFlag = vwr.getParameter (option); return (Clazz.instanceOf (testFlag, Boolean) && (testFlag).booleanValue () || Clazz.instanceOf (testFlag, Integer) && (testFlag).intValue () != 0); }, "J.api.JmolViewer,~S"); Clazz.defineMethod (c$, "openFileAsync", function (fileName) { this.openFileAsyncSpecial (fileName, 0); }, "~S"); Clazz.defineMethod (c$, "renderScreenImage", function (g, currentSize, rectClip) { this.apiPlatform.renderScreenImage (g, currentSize); }, "~O,~O,~O"); Clazz.defineMethod (c$, "getJsObjectInfo", function (jsObject, method, args) { return this.apiPlatform.getJsObjectInfo (jsObject, method, args); }, "~A,~S,~A"); c$.getJmolValueAsString = Clazz.defineMethod (c$, "getJmolValueAsString", function (jmolViewer, $var) { return (jmolViewer == null ? "" : "" + jmolViewer.getParameter ($var)); }, "J.api.JmolViewer,~S"); Clazz.defineMethod (c$, "dispose", function () { }); });