UNPKG

biojs-io-wig

Version:

parse wig

github.com/anilthanki/biojs-io-wig

anilthanki/biojs-io-wig

82 lines (72 loc) • 1.62 kB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
/* * biojs-io-wig * https://github.com/anilthanki/biojs-io-wig * * Copyright (c) 2014 Anil Thanki * Licensed under the Apache 2 license. */ var chai = require('chai'); chai.expect(); chai.should(); var biojsiowig = require('../lib/biojsiowig.js'); describe('biojs-io-wig module', function(){ describe('#hello()', function(){ it('should return a hello', function(){ biojsiowig.hello('biojs').should.equal("hello biojs"); }); }); }); describe('biojs-io-wig module', function(){ describe('#getRef()', function(){ it('should return a biojs', function(){ biojsiowig.getRef("variableStep chrom=ch00\n\ 2 36\n\ 10001 78\n\ 20001 39\n\ 30001 36\n\ 40001 7\n\ 50001 2\n\ 60001 3\n\ 70001 0\n\ variableStep chrom=ch08\n\ 40960001 6\n\ 40970001 0\n\ 40980001 23\n\ 40990001 23\n\ 41000001 21\n\ 41010001 34\n\ 41020001 19\n\ 41030001 10\n\ 41040001 26\n\ 41050001 12\n\ 41060001 21").should.eql(["ch00", "ch08"]); }); }); }); describe('biojs-io-wig module', function(){ describe('#parse', function(){ it('should return a biojs', function(){ biojsiowig.parse("variableStep chrom=ch00\n\ 2 36\n\ 10001 78\n\ 20001 39\n\ 30001 36\n\ 40001 7\n\ 50001 2\n\ 60001 3\n\ 70001 0\n\ variableStep chrom=ch08\n\ 40960001 6\n\ 40970001 0\n\ 40980001 23\n\ 40990001 23\n\ 41000001 21\n\ 41010001 34\n\ 41020001 19\n\ 41030001 10\n\ 41040001 26\n\ 41050001 12\n\ 41060001 21", "ch00").should.eql([["2", "36", null],["10001","78", null], ["20001","39", null],["30001","36", null],["40001","7", null],["50001","2", null],["60001","3", null],["70001","0", null]]); }); }); });