UNPKG

bio-vis-expression-bar

Version:

Simple barchart to show expression levels across experiments

1,840 lines (1,839 loc) 708 kB
{ "gene": "Traes_5BS_0AFC3F795.1", "compare": "Traes_4DS_1CF5D9107.1", "values": { "Traes_5BS_0AFC3F795.1": { "tpm": { "315": { "experiment": "315", "value": 24.5302 }, "316": { "experiment": "316", "value": 18.3407 }, "317": { "experiment": "317", "value": 20.382 }, "318": { "experiment": "318", "value": 26.8967 }, "319": { "experiment": "319", "value": 28.3076 }, "320": { "experiment": "320", "value": 22.3743 }, "321": { "experiment": "321", "value": 23.4027 }, "347": { "experiment": "347", "value": 8.81713 } } }, "Traes_4DS_1CF5D9107.1": { "tpm": { "315": { "experiment": "315", "value": 5.78975 }, "316": { "experiment": "316", "value": 3.9824 }, "317": { "experiment": "317", "value": 4.13884 }, "318": { "experiment": "318", "value": 4.5919 }, "319": { "experiment": "319", "value": 6.98978 }, "320": { "experiment": "320", "value": 7.97998 }, "321": { "experiment": "321", "value": 0.0726856 }, "347": { "experiment": "347", "value": 0 } } } }, "factorOrder": { "study": { "Development": 1, "PAMP Triggered Imune Response": 2, "CS_spike": 3, "developing spike": 4, "CS_methylome": 5, "Aneuploidy": 6, "DRP000768": 7, "ERP004505": 8, "ERP008767": 9, "SRP004884": 10, "SRP013449": 11, "SRP017303": 12, "SRP022869": 13, "ERP003465": 14, "SRP028357": 15, "SRP029372": 16, "SRP038912": 17, "SRP041017": 18, "SRP045409": 19, "SRP056412": 20, "choulet_URGI": 21, "ERP016738": 22, "ERP013829": 23, "SRP078208": 24, "ERP015130": 25, "SRP068165": 26, "SRP068156": 27, "SRP067916": 28, "SRP064598": 29, "ERP009837": 30, "SRP060670": 31, "SRP048912": 32, "SRP043554": 33, "ERP013983": 34 }, "Age": { "2d": 1, "3d": 2, "4d": 3, "7d": 4, "see": 5, "9d": 6, "14d": 7, "17d": 8, "3_lea": 9, "24d": 10, "till": 11, "5_lea": 12, "7_lea": 13, "1_sp": 14, "2_no": 15, "uninu": 16, "micro": 17, "karyo": 18, "boot": 19, "fboot": 20, "f_lea": 21, "emer": 22, "30%sp": 23, "e_ant": 24, "anth": 25, "l_ant": 26, "2dpa": 27, "4dpa": 28, "6dpa": 29, "8dpa": 30, "9dpa": 31, "10dpa": 32, "mil_g": 33, "g_fil": 34, "12dpa": 35, "4+dpa": 36, "14dpa": 37, "15dpa": 38, "s_dou": 39, "dou": 40, "20dpa": 41, "25dpa": 42, "h_dou": 43, "30dpa": 44, "35dpa": 45, "rip": 46 }, "High level age": { "see": 1, "veg": 2, "repr": 3 }, "High level stress-disease": { "none": 1, "dis": 2, "abio": 3 }, "High level tissue": { "spike": 1, "grain": 2, "le+sh": 3, "roots": 4 }, "High level variety": { "CS": 1, "Azh ": 2, "other": 3, "N_CS": 4 }, "Intermediate": { "gr_mi": 1, "gr_ha": 2, "en": 3, "al_e": 4, "e_sc": 5, "sc": 6, "al": 7, "tc": 8, "st_ov": 9, "anth": 10, "micro": 11, "emb": 12, "awn": 13, "glu": 14, "spike": 15, "s_let": 16, "rach": 17, "ped": 18, "int": 19, "sam": 20, "s_aer": 21, "sax": 22, "v_aer": 23, "lea_b": 24, "lea_s": 25, "lea": 26, "lea_l": 27, "flb": 28, "fls": 29, "f_lea": 30, "root": 31, "ram": 32 }, "Intermediate stress": { "NA": 1, "none": 2, "contr": 3, "chit": 4, "flg22": 5, "p_mil": 6, "str": 7, "str_2": 8, "Zymo": 9, "fus": 10, "fus_2": 11, "P-": 12, "PEG": 13, "drou": 14, "heat": 15, "dh": 16, "cold": 17 }, "Stress-disease": { "none": 1, "contr": 2, "mo3h": 3, "mo6h": 4, "mo12h": 5, "mo1d": 6, "mo24h": 7, "mo30h": 8, "mo3d": 9, "mo36h": 10, "mo4d": 11, "mo48h": 12, "mo50h": 13, "mo5d": 14, "mo9d": 15, "mo14d": 16, "mo21d": 17, "fu3h": 18, "fu6h": 19, "fu12h": 20, "fu24h": 21, "fu30h": 22, "fu36h": 23, "fu4d": 24, "fu48h": 25, "fu50h": 26, "fuaba": 27, "fuga": 28, "fp3d": 29, "fp36h": 30, "fp5d": 31, "sr1d": 32, "sr24h": 33, "sr2d": 34, "sr48h": 35, "sr3d": 36, "sr72h": 37, "sr5d": 38, "sr6+d": 39, "sr7d": 40, "sr9d": 41, "sr11d": 42, "pm24h": 43, "pm48h": 44, "pm72h": 45, "st4d": 46, "st10d": 47, "st13d": 48, "zt1d": 49, "zt14d": 50, "zt21d": 51, "zt4d": 52, "zt9d": 53, "mo_a": 54, "mo_s": 55, "chit": 56, "flg22": 57, "ds1h": 58, "ds6h": 59, "hs1h": 60, "hs6h": 61, "dhs1h": 62, "dhs6h": 63, "water": 64, "drou": 65, "pe2h": 66, "pe12h": 67, "cold": 68, "co": 69, "ti_co": 70, "P-10d": 71 }, "Tissue": { "grain": 1, "w_en": 2, "s_en": 3, "en": 4, "al_e": 5, "e_sc": 6, "sc": 7, "al": 8, "tc": 9, "pist": 10, "ps": 11, "sta": 12, "ov": 13, "st_ov": 14, "anth": 15, "micro": 16, "emb": 17, "awn": 18, "glu": 19, "lem": 20, "sp_b": 21, "sp_m": 22, "sp_t": 23, "spike": 24, "s_lets": 25, "s_let": 26, "rach": 27, "ped": 28, "int_2": 29, "stem": 30, "sam": 31, "col": 32, "see": 33, "shoot": 34, "sax": 35, "st_ax": 36, "1_lb": 37, "1_ls": 38, "2_lea": 39, "3_lb": 40, "3_ls": 41, "lea": 42, "lea_l": 43, "4_lea": 44, "5lb": 45, "5lb_s": 46, "5lbn+": 47, "5lbn-": 48, "5_ls": 49, "f_lea": 50, "flb": 51, "flbs": 52, "flbn+": 53, "flbn-": 54, "fls": 55, "root": 56, "ax_ro": 57, "ram": 58, "radi": 59 }, "Variety": { "CS": 1, "Azh": 2, "Hold": 3, "TAM": 4, "Banks": 5, "Avoc": 6, "AvocY": 7, "Sevin": 8, "Bobw": 9, "Char2": 10, "Field": 11, "Gemm": 12, "Giz": 13, "Mani": 14, "Rib": 15, "Svil": 16, "Vuka": 17, "P271": 18, "CSNIL": 19, "HTS-1": 20, "N9134": 21, "CM": 22, "CM_1": 23, "CM_2": 24, "CM_3": 25, "CM_4": 26, "JNILR": 27, "JNILS": 28, "NIL38": 29, "NIL51": 30, "WKDH": 31, "unkn": 32, "Baxt": 33, "Chara": 34, "Westo": 35, "Yipti": 36, "0362+": 37, "0807+": 38, "1038+": 39, "1275+": 40, "1516+": 41, "0807-": 42, "1038-": 43, "1275-": 44, "0362-": 45, "1516-": 46, "N1ATB": 47, "N1ATD": 48, "N1BTA": 49, "N1BTD": 50, "N1DTA": 51, "N1DTB": 52, "N5ATB": 53, "N5ATD": 54, "N5BTA": 55, "N5BTD": 56, "N5DTA": 57, "N5DTB": 58 } }, "longFactorName": { "study": { "Development": "Development", "PAMP Triggered Imune Response": "PAMP Triggered Imune Response", "CS_spike": "CS_spike", "developing spike": "developing spike", "CS_methylome": "CS_methylome", "Aneuploidy": "Aneuploidy", "DRP000768": "DRP000768", "ERP004505": "ERP004505", "ERP008767": "ERP008767", "SRP004884": "SRP004884", "SRP013449": "SRP013449", "SRP017303": "SRP017303", "SRP022869": "SRP022869", "ERP003465": "ERP003465", "SRP028357": "SRP028357", "SRP029372": "SRP029372", "SRP038912": "SRP038912", "SRP041017": "SRP041017", "SRP045409": "SRP045409", "SRP056412": "SRP056412", "choulet_URGI": "choulet_URGI", "ERP016738": "ERP016738", "ERP013829": "ERP013829", "SRP078208": "SRP078208", "ERP015130": "ERP015130", "SRP068165": "SRP068165", "SRP068156": "SRP068156", "SRP067916": "SRP067916", "SRP064598": "SRP064598", "ERP009837": "ERP009837", "SRP060670": "SRP060670", "SRP048912": "SRP048912", "SRP043554": "SRP043554", "ERP013983": "ERP013983" }, "Age": { "2d": "2 days", "3d": "3 days ", "4d": "4 days", "7d": "7 days", "see": "seedling stage", "9d": "9 days", "14d": "14 days", "17d": "17 days", "3_lea": "three leaf stage", "24d": "24 days", "till": "tillering stage", "5_lea": "fifth leaf stage", "7_lea": "seven leaf stage", "1_sp": "1 cm spike", "2_no": "two nodes detectable", "uninu": "late vacuolated uninucleate stage", "micro": "enlarged microspores with a star-like structure", "karyo": "first visible karyokinesis", "boot": "booting", "fboot": "Full boot", "f_lea": "Flag leaf stage", "emer": "Ear emergence", "30%sp": "30% spike", "e_ant": "Early anthesis", "anth": "anthesis", "l_ant": "Late anthesis", "2dpa": "2 dpa", "4dpa": "4 dpa", "6dpa": "6 dpa", "8dpa": "8 dpa", "9dpa": "9 dpa", "10dpa": "10 dpa", "mil_g": "milk grain stage", "g_fil": "grain filling", "12dpa": "12 dpa", "4+dpa": "4-12 dpa", "14dpa": "14 dpa", "15dpa": "15 dpa", "s_dou": "Soft dough", "dou": "Dough", "20dpa": "20 dpa", "25dpa": "25 dpa", "h_dou": "Hard dough", "30dpa": "30 dpa", "35dpa": "35 dpa", "rip": "Ripening" }, "High level age": { "see": "seedling", "veg": "vegetative", "repr": "reproductive" }, "High level stress-disease": { "none": "none", "dis": "disease", "abio": "abiotic" }, "High level tissue": { "spike": "spike", "grain": "grain", "le+sh": "leaves/shoots", "roots": "roots" }, "High level variety": { "CS": "Chinese Spring", "Azh ": "Azhurnaya", "other": "other", "N_CS": "Nullitetra Chinese Spring" }, "Intermediate": { "gr_mi": "grain milk and soft dough", "gr_ha": "grain hard dough and ripening", "en": "endosperm", "al_e": "aleurone layer and starchy endosperm", "e_sc": "endosperm + seed coat", "sc": "seed coat", "al": "aleurone", "tc": "transfer cells", "st_ov": "stigma & ovary", "anth": "anther", "micro": "microspores", "emb": "embryo", "awn": "awns", "glu": "glumes", "spike": "spike", "s_let": "spikelets", "rach": "rachis", "ped": "peduncle", "int": "internode", "sam": "shoot apical meristem", "s_aer": "seedling aerial tissues", "sax": "shoot axis", "v_aer": "vegetative aerial tissues", "lea_b": "leaf blades excl flag", "lea_s": "leaf sheaths excl flag", "lea": "leaf excl flag leaf", "lea_l": "leaf ligule", "flb": "flag leaf blade", "fls": "flag leaf sheath", "f_lea": "flag leaf", "root": "roots", "ram": "root apical meristem" }, "Intermediate stress": { "NA": "NA", "none": "none", "contr": "No stress control", "chit": "PAMP chitin", "flg22": "PAMP flg22", "p_mil": "powdery mildew", "str": "stripe rust", "str_2": "stripe rust 2", "Zymo": "Zymoseptoria tritici", "fus": "Fusarium pseudograminearum", "fus_2": "Fusarium pseudograminearum study2", "P-": "Phosphorous starvation 10 d shoots", "PEG": "PEG 6000", "drou": "drought stress", "heat": "heat stress", "dh": "drought&heat combined stress", "cold": "cold 2 weeks (4C)" }, "Stress-disease": { "none": "none", "contr": "control", "mo3h": "mock inoculation 3 hours", "mo6h": "mock inoculation 6 hours", "mo12h": "mock inoculation 12 hours", "mo1d": "mock inoculation 1 day", "mo24h": "mock inoculation 24 hours", "mo30h": "mock inoculation 30 hours", "mo3d": "mock inoculation 3 days", "mo36h": "mock inoculation 36 hours", "mo4d": "mock inoculation 4 days", "mo48h": "mock inoculation 48 hours", "mo50h": "mock inoculation 50 hours", "mo5d": "mock inoculation 5 days", "mo9d": "mock inoculation 9 days", "mo14d": "mock inoculation 14 days", "mo21d": "mock inoculation 21 days", "fu3h": "Fusarium graminearum inoculation 3 hours", "fu6h": "Fusarium graminearum inoculation 6 hours", "fu12h": "Fusarium graminearum inoculation 12 hours", "fu24h": "Fusarium graminearum inoculation 24 hours", "fu30h": "Fusarium graminearum inoculation 30 hours", "fu36h": "Fusarium graminearum inoculation 36 hours", "fu4d": "Fusarium graminearum inoculation 4 days", "fu48h": "Fusarium graminearum inoculation 48 hours", "fu50h": "Fusarium graminearum inoculation 50 hours", "fuaba": "Fusarium graminearum and 1mM ABA inoculation 24 hours", "fuga": "Fusarium graminearum and 1mM giberellic acid inoculation 24 hours", "fp3d": "Fusarium pseudograminearum inoculation 3 days", "fp36h": "Fusarium pseudograminearum inoculation 36 hours", "fp5d": "Fusarium pseudograminearum inoculation 5 days", "sr1d": "stripe rust pathogen 87/66 1 day", "sr24h": "stripe rust pathogen CYR31 24 hours", "sr2d": "stripe rust pathogen 87/66 2 days", "sr48h": "stripe rust pathogen CYR31 48 hours", "sr3d": "stripe rust pathogen 87/66 3 days", "sr72h": "stripe rust pathogen CYR31 72 hours", "sr5d": "stripe rust pathogen 87/66 5 days", "sr6+d": "stripe rust mixture 6/14 days", "sr7d": "stripe rust pathogen 87/66 7 days", "sr9d": "stripe rust pathogen 87/66 9 days", "sr11d": "stripe rust pathogen 87/66 11 days", "pm24h": "Powdery mildew pathogen E09 24 hours", "pm48h": "Powdery mildew pathogen E09 48 hours", "pm72h": "Powdery mildew pathogen E09 72 hours", "st4d": "Septoria tritici 4 days", "st10d": "Septoria tritici 10 days", "st13d": "Septoria tritici 13 days", "zt1d": "Zymoseptoria tritici inoculation 1 day", "zt14d": "Zymoseptoria tritici inoculation 14 days", "zt21d": "Zymoseptoria tritici inoculation 21 days", "zt4d": "Zymoseptoria tritici inoculation 4 days", "zt9d": "Zymoseptoria tritici inoculation 9 days", "mo_a": "Magnaporthe oryzae asymptomatic", "mo_s": "Magnaporthe oryzae symptomatic", "chit": "chitin (1 g per liter)", "flg22": "flg22 (500 nM)", "ds1h": "1 hour of drought stress", "ds6h": "6 hour of drought stress", "hs1h": "1 hour of heat stress", "hs6h": "6 hour of heat stress", "dhs1h": "1 hour of drought&heat combined stress", "dhs6h": "6 hour of drought&heat combined stress", "water": "water", "drou": "water stress early booting", "pe2h": "PEG 6000 2 hours", "pe12h": "PEG 6000 12 hours", "cold": "cold 2 weeks (4C)", "co": "10 days cold treatment", "ti_co": "tissue culture following 10 days cold treatment", "P-10d": "Phosphorous starvation 10 days" }, "Tissue": { "grain": "grain", "w_en": "whole endosperm", "s_en": "starchy endosperm", "en": "endosperm", "al_e": "aleurone layer and starchy endosperm", "e_sc": "starchy endosperm + seed coat", "sc": "seed coat", "al": "aleurone layer", "tc": "transfer cells", "pist": "pistil", "ps": "pistillody stamen", "sta": "stamen", "ov": "ovary", "st_ov": "stigma & ovary", "anth": "anther", "micro": "microspores", "emb": "embryo proper", "awn": "awns", "glu": "glumes", "lem": "lemma", "sp_b": "spike (bottom third)", "sp_m": "spike (middle third)", "sp_t": "spike (top third)", "spike": "spike", "s_lets": "spikelets", "s_let": "spikelets (only using palea, lemma and rachis)", "rach": "rachis", "ped": "peduncle", "int_2": "Internode #2", "stem": "stem", "sam": "shoot apical meristem", "col": "coleoptile", "see": "seedling", "shoot": "shoots", "sax": "shoot axis", "st_ax": "stem axis", "1_lb": "first leaf blade", "1_ls": "first leaf sheath", "2_lea": "second leaf", "3_lb": "third leaf blade", "3_ls": "third leaf sheath", "lea": "leaf", "lea_l": "leaf ligule", "4_lea": "fourth leaf", "5lb": "fifth leaf blade", "5lb_s": "fifth leaf blade (senescence)", "5lbn+": "fifth leaf blade night (+0.25h) 22:15", "5lbn-": "fifth leaf blade night (-0.25h) 21:45", "5_ls": "fifth leaf sheath", "f_lea": "flag leaf", "flb": "flag leaf blade", "flbs": "flag leaf blade (senescence)", "flbn+": "flag leaf blade night (+0.25h) 07:15", "flbn-": "flag leaf blade night (-0.25h) 06:45", "fls": "flag leaf sheath", "root": "roots", "ax_ro": "axillary roots", "ram": "root apical meristem", "radi": "radicle" }, "Variety": { "CS": "Chinese Spring", "Azh": "Azhurnaya", "Hold": "Holdfast", "TAM": "TAM107", "Banks": "Banks", "Avoc": "Avocet S", "AvocY": "Avocet+Yr5", "Sevin": "Sevin", "Bobw": "Bobwhite", "Char2": "Chara", "Field": "Fielder", "Gemm": "Gemmiza 10", "Giz": "Giza 168", "Mani": "Manitou", "Rib": "Riband", "Svil": "Svilena", "Vuka": "Vuka", "P271": "P271", "CSNIL": "Chinese Spring NIL CSTP", "HTS-1": "HTS-1", "N9134": "N9134", "CM": "CM-82036", "CM_1": "NIL1 from CM-82036 BC5 in Remus", "CM_2": "NIL2 from CM-82036 BC5 in Remus", "CM_3": "NIL3 from CM-82036 BC5 in Remus", "CM_4": "NIL4 from CM-82036 BC5 in Remus", "JNILR": "Janz*2 NIL1 resistant", "JNILS": "Janz*2 NIL1 susceptible", "NIL38": "NIL38 from BC55F2 Remus in CM-82036", "NIL51": "NIL51 from BC55F2 Remus in CM-82036", "WKDH": "WestoniaxKauz DH line", "unkn": "unknown (Bangladesh)", "Baxt": "Baxter -4A dormancy QTL", "Chara": "Chara -4A dormancy QTL", "Westo": "Westonia -4A dormancy QTL", "Yipti": "Yipti +4A dormancy QTL", "0362+": "NIL 0362 +4A dormancy QTL", "0807+": "NIL 0807 +4A dormancy QTL", "1038+": "NIL 1038 +4A dormancy QTL", "1275+": "NIL 1275 +4A dormancy QTL", "1516+": "NIL 1516 +4A dormancy QTL", "0807-": "NIL 0807 -4A dormancy QTL", "1038-": "NIL 1038 -4A dormancy QTL", "1275-": "NIL 1275 -4A dormancy QTL", "0362-": "NIL 0362 -4A dormancy QTL", "1516-": "NIL 1516 -4A dormancy QTL", "N1ATB": "Chinese Spring, N1AT1B", "N1ATD": "Chinese Spring, N1AT1D", "N1BTA": "Chinese Spring, N1BT1A", "N1BTD": "Chinese Spring, N1BT1D", "N1DTA": "Chinese Spring, N1DT1A", "N1DTB": "Chinese Spring, N1DT1B", "N5ATB": "Chinese Spring, N5AT5B", "N5ATD": "Chinese Spring, N5AT5D", "N5BTA": "Chinese Spring, N5BT5A", "N5BTD": "Chinese Spring, N5BT5D", "N5DTA": "Chinese Spring, N5DT5A", "N5DTB": "Chinese Spring, N5DT5B" } }, "selectedFactors": { "study": { "Development": false, "PAMP Triggered Imune Response": false, "CS_spike": false, "developing spike": false, "CS_methylome": false, "Aneuploidy": false, "DRP000768": false, "ERP004505": false, "ERP008767": false, "SRP004884": false, "SRP013449": false, "SRP017303": false, "SRP022869": false, "ERP003465": false, "SRP028357": false, "SRP029372": false, "SRP038912": false, "SRP041017": false, "SRP045409": false, "SRP056412": false, "choulet_URGI": false, "ERP016738": false, "ERP013829": false, "SRP078208": false, "ERP015130": false, "SRP068165": false, "SRP068156": false, "SRP067916": false, "SRP064598": false, "ERP009837": false, "SRP060670": false, "SRP048912": false, "SRP043554": false, "ERP013983": false }, "Age": { "2d": true, "3d": true, "4d": true, "7d": true, "see": true, "9d": true, "14d": true, "17d": true, "3_lea": true, "24d": true, "till": true, "5_lea": true, "7_lea": true, "1_sp": true, "2_no": true, "uninu": true, "micro": true, "karyo": true, "boot": true, "fboot": true, "f_lea": true, "emer": true, "30%sp": true, "e_ant": true, "anth": true, "l_ant": true, "2dpa": true, "4dpa": true, "6dpa": true, "8dpa": true, "9dpa": true, "10dpa": true, "mil_g": true, "g_fil": true, "12dpa": true, "4+dpa": true, "14dpa": true, "15dpa": true, "s_dou": true, "dou": true, "20dpa": true, "25dpa": true, "h_dou": true, "30dpa": true, "35dpa": true, "rip": true }, "High level age": { "see": true, "veg": true, "repr": true }, "High level stress-disease": { "none": true, "dis": true, "abio": true }, "High level tissue": { "spike": true, "grain": true, "le+sh": true, "roots": true }, "High level variety": { "CS": true, "Azh ": true, "other": true, "N_CS": true }, "Intermediate": { "gr_mi": true, "gr_ha": true, "en": true, "al_e": true, "e_sc": true, "sc": true, "al": true, "tc": true, "st_ov": true, "anth": true, "micro": true, "emb": true, "awn": true, "glu": true, "spike": true, "s_let": true, "rach": true, "ped": true, "int": true, "sam": true, "s_aer": true, "sax": true, "v_aer": true, "lea_b": true, "lea_s": true, "lea": true, "lea_l": true, "flb": true, "fls": true, "f_lea": true, "root": true, "ram": true }, "Intermediate stress": { "NA": true, "none": true, "contr": true, "chit": true, "flg22": true, "p_mil": true, "str": true, "str_2": true, "Zymo": true, "fus": true, "fus_2": true, "P-": true, "PEG": true, "drou": true, "heat": true, "dh": true, "cold": true }, "Stress-disease": { "none": true, "contr": true, "mo3h": true, "mo6h": true, "mo12h": true, "mo1d": true, "mo24h": true, "mo30h": true, "mo3d": true, "mo36h": true, "mo4d": true, "mo48h": true, "mo50h": true, "mo5d": true, "mo9d": true, "mo14d": true, "mo21d": true, "fu3h": true, "fu6h": true, "fu12h": true, "fu24h": true, "fu30h": true, "fu36h": true, "fu4d": true, "fu48h": true, "fu50h": true, "fuaba": true, "fuga": true, "fp3d": true, "fp36h": true, "fp5d": true, "sr1d": true, "sr24h": true, "sr2d": true, "sr48h": true, "sr3d": true, "sr72h": true, "sr5d": true, "sr6+d": true, "sr7d": true, "sr9d": true, "sr11d": true, "pm24h": true, "pm48h": true, "pm72h": true, "st4d": true, "st10d": true, "st13d": true, "zt1d": true, "zt14d": true, "zt21d": true, "zt4d": true, "zt9d": true, "mo_a": true, "mo_s": true, "chit": true, "flg22": true, "ds1h": true, "ds6h": true, "hs1h": true, "hs6h": true, "dhs1h": true, "dhs6h": true, "water": true, "drou": true, "pe2h": true, "pe12h": true, "cold": true, "co": true, "ti_co": true, "P-10d": true }, "Tissue": { "grain": true, "w_en": true, "s_en": true, "en": true, "al_e": true, "e_sc": true, "sc": true, "al": true, "tc": true, "pist": true, "ps": true, "sta": true, "ov": true, "st_ov": true, "anth": true, "micro": true, "emb": true, "awn": true, "glu": true, "lem": true, "sp_b": true, "sp_m": true, "sp_t": true, "spike": true, "s_lets": true, "s_let": true, "rach": true, "ped": true, "int_2": true, "stem": true, "sam": true, "col": true, "see": true, "shoot": true, "sax": true, "st_ax": true, "1_lb": true, "1_ls": true, "2_lea": true, "3_lb": true, "3_ls": true, "lea": true, "lea_l": true, "4_lea": true, "5lb": true, "5lb_s": true, "5lbn+": true, "5lbn-": true, "5_ls": true, "f_lea": true, "flb": true, "flbs": true, "flbn+": true, "flbn-": true, "fls": true, "root": true, "ax_ro": true, "ram": true, "radi": true }, "Variety": { "CS": true, "Azh": true, "Hold": true, "TAM": true, "Banks": true, "Avoc": true, "AvocY": true, "Sevin": true, "Bobw": true, "Char2": true, "Field": true, "Gemm": true, "Giz": true, "Mani": true, "Rib": true, "Svil": true, "Vuka": true, "P271": true, "CSNIL": true, "HTS-1": true, "N9134": true, "CM": true, "CM_1": true, "CM_2": true, "CM_3": true, "CM_4": true, "JNILR": true, "JNILS": true, "NIL38": true, "NIL51": true, "WKDH": true, "unkn": true, "Baxt": true, "Chara": true, "Westo": true, "Yipti": true, "0362+": true, "0807+": true, "1038+": true, "1275+": true, "1516+": true, "0807-": true, "1038-": true, "1275-": true, "0362-": true, "1516-": true, "N1ATB": true, "N1ATD": true, "N1BTA": true, "N1BTD": true, "N1DTA": true, "N1DTB": true, "N5ATB": true, "N5ATD": true, "N5BTA": true, "N5BTD": true, "N5DTA": true, "N5DTB": true } }, "defaultFactorSelection": { "Age": false, "High level stress-disease": true, "High level age": true, "High level tissue": true, "High level variety": true, "Stress-disease": false, "study": false, "Tissue": false, "Intermediate": false, "Intermediate stress": false }, "defaultFactorOrder": [ "study", "High level tissue", "Tissue", "High level age", "Age", "High level stress-disease", "Stress-disease", "High level variety", "Variety", "Intermediate", "Intermediate stress" ], "experiments": { "1": { "name": "Sample_10", "group": "1" }, "2": { "name": "Sample_18", "group": "2" }, "3": { "name": "Sample_3A", "group": "3" }, "4": { "name": "Sample_12", "group": "4" }, "5": { "name": "Sample_26", "group": "5" }, "6": { "name": "Sample_6A", "group": "6" }, "7": { "name": "Sample_11", "group": "7" }, "8": { "name": "Sample_20", "group": "8" }, "9": { "name": "Sample_9A", "group": "9" }, "10": { "name": "Sample_10R1", "group": "10" }, "11": { "name": "Sample_21", "group": "11" }, "12": { "name": "Sample_30", "group": "12" }, "13": { "name": "Sample_13R1", "group": "13" }, "14": { "name": "Sample_23", "group": "14" }, "15": { "name": "Sample_32", "group": "15" }, "16": { "name": "Sample_13", "group": "16" }, "17": { "name": "Sample_33", "group": "17" }, "18": { "name": "Sample_18A", "group": "18" }, "19": { "name": "Sample_19A", "group": "19" }, "20": { "name": "Sample_20A", "group": "20" }, "21": { "name": "Sample_21A", "group": "21" }, "22": { "name": "Sample_22B", "group": "22" }, "23": { "name": "Sample_23A", "group": "23" }, "24": { "name": "Sample_24A", "group": "24" }, "25": { "name": "Sample_25A", "group": "25" }, "26": { "name": "Sample_26A", "group": "26" }, "27": { "name": "Sample_27A", "group": "27" }, "28": { "name": "Sample_28A", "group": "28" }, "29": { "name": "Sample_29A", "group": "29" }, "30": { "name": "Sample_30A", "group": "30" }, "31": { "name": "Sample_15", "group": "31" }, "32": { "name": "Sample_32R2", "group": "32" }, "33": { "name": "Sample_33A", "group": "33" }, "34": { "name": "Sample_16", "group": "34" }, "35": { "name": "Sample_35R1", "group": "35" }, "36": { "name": "Sample_36A", "group": "36" }, "37": { "name": "Sample_37A", "group": "37" }, "38": { "name": "Sample_38A", "group": "38" }, "39": { "name": "Sample_39A", "group": "39" }, "40": { "name": "Sample_40A", "group": "40" }, "41": { "name": "Sample_41A", "group": "41" }, "42": { "name": "Sample_42A", "group": "42" }, "43": { "name": "Sample_43A", "group": "43" }, "44": { "name": "Sample_44A", "group": "44" }, "45": { "name": "Sample_45A", "group": "45" }, "46": { "name": "Sample_46A", "group": "46" }, "47": { "name": "Sample_d11", "group": "47" }, "48": { "name": "Sample_d12", "group": "48" }, "49": { "name": "Sample_49A", "group": "49" }, "50": { "name": "Sample_50A", "group": "50" }, "51": { "name": "Sample_51A", "group": "51" }, "52": { "name": "Sample_52A", "group": "52" }, "53": { "name": "Sample_53A", "group": "53" }, "54": { "name": "Sample_54A", "group": "54" }, "55": { "name": "Sample_55B", "group": "55" }, "56": { "name": "Sample_56A", "group": "56" }, "57": { "name": "Sample_57A", "group": "57" }, "58": { "name": "Sample_58A", "group": "58" }, "59": { "name": "Sample_59A", "group": "59" }, "60": { "name": "Sample_60A", "group": "60" }, "61": { "name": "Sample_61A", "group": "61" }, "62": { "name": "Sample_62A", "group": "62" }, "63": { "name": "Sample_63A", "group": "63" }, "64": { "name": "Sample_64A", "group": "64" }, "65": { "name": "Sample_65A", "group": "65" }, "66": { "name": "Sample_66A", "group": "66" }, "67": { "name": "Sample_67A", "group": "67" }, "68": { "name": "Sample_68A", "group": "68" }, "69": { "name": "Sample_69A", "group": "69" }, "70": { "name": "Sample_70A", "group": "70" }, "71": { "name": "Sample_71A", "group": "71" }, "72": { "name": "Sample_72A", "group": "72" }, "73": { "name": "Sample_73A", "group": "73" }, "74": { "name": "Sample_74A", "group": "74" }, "75": { "name": "Sample_76A", "group": "75" }, "76": { "name": "Sample_75A", "group": "76" }, "77": { "name": "Sample_77A", "group": "77" }, "78": { "name": "Sample_78A", "group": "78" }, "79": { "name": "Sample_79A", "group": "79" }, "80": { "name": "Sample_80A", "group": "80" }, "81": { "name": "Sample_81A", "group": "81" }, "82": { "name": "Sample_82A", "group": "82" }, "83": { "name": "Sample_83B", "group": "83" }, "84": { "name": "Sample_84A", "group": "84" }, "85": { "name": "Sample_85B", "group": "85" }, "86": { "name": "Sample_86A", "group": "86" }, "87": { "name": "Sample_87A", "group": "87" }, "88": { "name": "Sample_88A", "group": "88" }, "89": { "name": "Sample_89B", "group": "89" }, "90": { "name": "Sample_90A", "group": "90" }, "91": { "name": "Sample_91A", "group": "91" }, "92": { "name": "Sample_92A", "group": "92" }, "93": { "name": "Sample_93A", "group": "93" }, "94": { "name": "Sample_94B", "group": "94" }, "95": { "name": "Sample_95A", "group": "95" }, "96": { "name": "Sample_96A", "group": "96" }, "97": { "name": "Sample_97A", "group": "97" }, "98": { "name": "Sample_98A", "group": "98" }, "99": { "name": "Sample_99A", "group": "99" }, "100": { "name": "Sample_100A", "group": "100" }, "101": { "name": "Sample_101A", "group": "101" }, "102": { "name": "Sample_102A", "group": "102" }, "103": { "name": "Sample_103A", "group": "103" }, "104": { "name": "Sample_104B", "group": "104" }, "105": { "name": "Sample_105B", "group": "105" }, "106": { "name": "Sample_106A", "group": "106" }, "107": { "name": "Sample_107B", "group": "107" }, "108": { "name": "Sample_108A", "group": "108" }, "109": { "name": "Sample_109A", "group": "109" }, "110": { "name": "Sample_110A", "group": "110" }, "111": { "name": "Sample_111B", "group": "111" }, "112": { "name": "Sample_112B", "group": "112" }, "113": { "name": "Sample_113B", "group": "113" }, "114": { "name": "Sample_114B", "group": "114" }, "115": { "name": "Sample_115A", "group": "115" }, "116": { "name": "Sample_116A", "group": "116" }, "117": { "name": "Sample_117A", "group": "117" }, "118": { "name": "Sample_118A", "group": "118" }, "119": { "name": "Sample_119B", "group": "119" }, "120": { "name": "Sample_120A", "group": "120" }, "121": { "name": "Sample_121A", "group": "121" }, "122": { "name": "Sample_122A", "group": "122" }, "123": { "name": "Sample_123A", "group": "123" }, "124": { "name": "Sample_124A", "group": "124" }, "125": { "name": "Sample_125A", "group": "125" }, "126": { "name": "Sample_126A", "group": "126" }, "127": { "name": "Sample_127A", "group": "127" }, "128": { "name": "Sample_128A", "group": "128" }, "129": { "name": "Sample_129A", "group": "129" }, "130": { "name": "Sample_130A", "group": "130" }, "131": { "name": "Sample_131A", "group": "131" }, "132": { "name": "Sample_132A", "group": "132" }, "133": { "name": "Sample_133A", "group": "133" }, "134": { "name": "Sample_134A", "group": "134" }, "135": { "name": "Sample_135A", "group": "135" }, "136": { "name": "Sample_136A", "group": "136" }, "137": { "name": "Sample_137B", "group": "137" }, "138": { "name": "Sample_138A", "group": "138" }, "139": { "name": "Sample_139A", "group": "139" }, "140": { "name": "Sample_140A", "group": "140" }, "141": { "name": "Sample_141A", "group": "141" }, "142": { "name": "Sample_142A", "group": "142" }, "143": { "name": "Sample_143A", "group": "143" }, "144": { "name": "Sample_144B", "group": "144" }, "145": { "name": "Sample_157A", "group": "145" }, "146": { "name": "Sample_158A", "group": "146" }, "147": { "name": "Sample_159B", "group": "147" }, "148": { "name": "Sample_160A", "group": "148" }, "149": { "name": "Sample_161A", "group": "149" }, "150": { "name": "Sample_162A", "group": "150" }, "151": { "name": "Sample_163A", "group": "151" }, "152": { "name": "Sample_164A", "group": "152" }, "153": { "name": "Sample_165A", "group": "153" }, "154": { "name": "Sample_166A", "group": "154" }, "155": { "name": "Sample_167A", "group": "155" }, "156": { "name": "Sample_168A", "group": "156" }, "157": { "name": "Sample_169A", "group": "157" }, "158": { "name": "Sample_170A", "group": "158" }, "159": { "name": "Sample_171A", "group": "159" }, "160": { "name": "Sample_172A", "group": "160" }, "161": { "name": "Sample_173A", "group": "161" }, "162": { "name": "Sample_174A", "group": "162" }, "163": { "name": "Sample_175A", "group": "163" }, "164": { "name": "Sample_176A", "group": "164" }, "165": { "name": "Sample_177A", "group": "165" }, "166": { "name": "Sample_178A", "group": "166" }, "167": { "name": "Sample_179A", "group": "167" }, "168": { "name": "Sample_180A", "group": "168"