bio-vis-expression-bar
Version:
Simple barchart to show expression levels across experiments
842 lines • 24.4 kB
JavaScript
{
"gene": "TR124859|c0_g1_i1",
"compare": "TR17637|c0_g1_i2",
"values": {
"TR124859|c0_g1_i1": {
"count": {
"1": {
"experiment": "1",
"value": 8090.0
},
"2": {
"experiment": "2",
"value": 7225.0
},
"3": {
"experiment": "3",
"value": 4929.0
},
"4": {
"experiment": "4",
"value": 20030.0
},
"5": {
"experiment": "5",
"value": 28733.0
},
"6": {
"experiment": "6",
"value": 23755.0
},
"7": {
"experiment": "7",
"value": 15096.0
},
"8": {
"experiment": "8",
"value": 74165.0
},
"9": {
"experiment": "9",
"value": 19175.0
}
},
"tpm": {
"1": {
"experiment": "1",
"value": 45.4243
},
"2": {
"experiment": "2",
"value": 46.6681
},
"3": {
"experiment": "3",
"value": 43.2864
},
"4": {
"experiment": "4",
"value": 173.892
},
"5": {
"experiment": "5",
"value": 230.063
},
"6": {
"experiment": "6",
"value": 234.38
},
"7": {
"experiment": "7",
"value": 127.96
},
"8": {
"experiment": "8",
"value": 449.256
},
"9": {
"experiment": "9",
"value": 134.728
}
}
},
"TR17637|c0_g1_i2": {
"count": {
"10": {
"experiment": "10",
"value": 1242.46
},
"11": {
"experiment": "11",
"value": 1232.75
},
"12": {
"experiment": "12",
"value": 1919.49
},
"13": {
"experiment": "13",
"value": 34548.1
},
"14": {
"experiment": "14",
"value": 47567.4
},
"15": {
"experiment": "15",
"value": 57527.1
},
"16": {
"experiment": "16",
"value": 9997.83
},
"17": {
"experiment": "17",
"value": 8201.92
},
"18": {
"experiment": "18",
"value": 21280.8
}
},
"tpm": {
"10": {
"experiment": "10",
"value": 9.85802
},
"11": {
"experiment": "11",
"value": 8.09319
},
"12": {
"experiment": "12",
"value": 14.8536
},
"13": {
"experiment": "13",
"value": 242.966
},
"14": {
"experiment": "14",
"value": 400.583
},
"15": {
"experiment": "15",
"value": 604.446
},
"16": {
"experiment": "16",
"value": 129.931
},
"17": {
"experiment": "17",
"value": 75.3534
},
"18": {
"experiment": "18",
"value": 171.227
}
}
}
},
"factorOrder": {
"study": {
"Blackberry_ripe": 1,
"Raspberry_ripe": 2
},
"Age": {
"7d": 1,
"see": 2,
"14d": 3,
"3_lea": 4,
"24d": 5,
"till": 6,
"5_lea": 7,
"1_sp": 8,
"2_no": 9,
"f_lea": 10,
"anth": 11,
"2dpa": 12,
"4dpa": 13,
"6dpa": 14,
"8dpa": 15,
"9dpa": 16,
"10dpa": 17,
"11dpa": 18,
"12dpa": 19,
"4+dpa": 20,
"14dpa": 21,
"15dpa": 22,
"20dpa": 23,
"25dpa": 24,
"30dpa": 25,
"35dpa": 26,
"green": 31,
"red": 32,
"ripe": 33
},
"High level age": {
"see": 1,
"veg": 2,
"repr": 3
},
"High level stress-disease": {
"none": 1,
"dis": 2,
"abio": 3,
"trans": 4
},
"High level tissue": {
"spike": 1,
"grain": 2,
"le+sh": 3,
"roots": 4,
"berry": 5
},
"High level variety": {
"CS": 1,
"other": 2,
"N_CS": 3,
"Rg": 4,
"Ri": 5
},
"Stress-disease": {
"none": 1,
"mo30h": 2,
"mo50h": 3,
"fu30h": 4,
"fu50h": 5,
"sr24h": 6,
"sr48h": 7,
"sr72h": 8,
"sr6+d": 9,
"pm24h": 10,
"pm48h": 11,
"pm72h": 12,
"st4d": 13,
"st10d": 14,
"st13d": 15,
"ds1h": 16,
"ds6h": 17,
"hs1h": 18,
"hs6h": 19,
"dhs1h": 20,
"dhs6h": 21,
"P-10d": 22,
"GPC-": 23
},
"Tissue": {
"grain": 1,
"w_en": 2,
"s_en": 3,
"al_e": 4,
"e_sc": 5,
"sc": 6,
"al": 7,
"tc": 8,
"pist": 9,
"ps": 10,
"sta": 11,
"spike": 12,
"s_let": 13,
"see": 14,
"shoot": 15,
"lea": 16,
"2_lea": 17,
"f_lea": 18,
"stem": 19,
"root": 20,
"berry": 21
},
"Variety": {
"CS": 1,
"Hold": 2,
"TAM": 3,
"Banks": 4,
"Avoc": 5,
"Sevin": 6,
"Bobw": 7,
"GPC": 8,
"P271": 9,
"CSNIL": 10,
"HTS-1": 11,
"N9134": 12,
"synth": 13,
"CM": 14,
"CM_1": 15,
"CM_2": 16,
"CM_3": 17,
"CM_4": 18,
"Baxt": 19,
"Chara": 20,
"Westo": 21,
"Yipti": 22,
"0362+": 23,
"0807+": 24,
"1038+": 25,
"1275+": 26,
"1516+": 27,
"0807-": 28,
"1038-": 29,
"1275-": 30,
"0362-": 31,
"1516-": 32,
"N1ATB": 33,
"N1ATD": 34,
"N1BTA": 35,
"N1BTD": 36,
"N1DTA": 37,
"N1DTB": 38,
"N5ATB": 39,
"N5ATD": 40,
"N5BTA": 41,
"N5BTD": 42,
"N5DTA": 43,
"N5DTB": 44,
"blackberry": 50,
"prestige": 51
}
},
"longFactorName": {
"study": {
"Blackberry_ripe": "Blackberry ripe stages",
"Raspberry_ripe": "Raspberry ripe stages"
},
"Age": {
"7d": "7 days",
"see": "seedling stage",
"14d": "14 days",
"3_lea": "three leaf stage",
"24d": "24 days",
"till": "tillering stage",
"5_lea": "fifth leaf stage",
"1_sp": "1 cm spike",
"2_no": "two nodes detectable",
"f_lea": "flag leaf stage",
"anth": "anthesis",
"2dpa": "2 dpa",
"4dpa": "4 dpa",
"6dpa": "6 dpa",
"8dpa": "8 dpa",
"9dpa": "9 dpa",
"10dpa": "10 dpa",
"11dpa": "11 dpa",
"12dpa": "12 dpa",
"4+dpa": "4-12 dpa",
"14dpa": "14 dpa",
"15dpa": "15 dpa",
"20dpa": "20 dpa",
"25dpa": "25 dpa",
"30dpa": "30 dpa",
"35dpa": "35 dpa",
"green": "green",
"red": "red",
"ripe": "ripe"
},
"High level age": {
"see": "seedling",
"veg": "vegetative",
"repr": "reproductive"
},
"High level stress-disease": {
"none": "none",
"dis": "disease",
"abio": "abiotic",
"trans": "transgenic"
},
"High level tissue": {
"spike": "spike",
"grain": "grain",
"le+sh": "leaves/shoots",
"roots": "roots",
"berry": "berry"
},
"High level variety": {
"CS": "Chinese Spring",
"other": "other",
"N_CS": "Nullitetra Chinese Spring",
"Rg": "Rubus genevieri",
"Ri": "Rubus idaeus"
},
"Stress-disease": {
"none": "none",
"mo30h": "mock inoculation 30 hours",
"mo50h": "mock inoculation 50 hours",
"fu30h": "Fusarium graminearum inoculation 30 hours",
"fu50h": "Fusarium graminearum inoculation 50 hours",
"sr24h": "stripe rust pathogen CYR31 24 hours",
"sr48h": "stripe rust pathogen CYR31 48 hours",
"sr72h": "stripe rust pathogen CYR31 72 hours",
"sr6+d": "stripe rust mixture 6/14 days",
"pm24h": "Powdery mildew pathogen E09 24 hours",
"pm48h": "Powdery mildew pathogen E09 48 hours",
"pm72h": "Powdery mildew pathogen E09 72 hours",
"st4d": "Septoria tritici 4 days",
"st10d": "Septoria tritici 10 days",
"st13d": "Septoria tritici 13 days",
"ds1h": "1 hour of drought stress",
"ds6h": "6 hour of drought stress",
"hs1h": "1 hour of heat stress",
"hs6h": "6 hour of heat stress",
"dhs1h": "1 hour of drought&heat combined stress",
"dhs6h": "6 hour of drought&heat combined stress",
"P-10d": "Phosphorous starvation 10 days",
"GPC-": "GPC RNAi "
},
"Tissue": {
"grain": "grain",
"w_en": "whole endosperm",
"s_en": "starchy endosperm",
"al_e": "aleurone layer and starchy endosperm",
"e_sc": "starchy endosperm + seed coat",
"sc": "seed coat",
"al": "aleurone layer",
"tc": "transfer cells",
"pist": "pistil",
"ps": "pistillody stamen",
"sta": "stamen",
"spike": "spike",
"s_let": "spikelets (only using palea, lemma and rachis)",
"see": "seedling",
"shoot": "shoots",
"lea": "leaves",
"2_lea": "2nd leaf",
"f_lea": "flag leaf",
"stem": "stem",
"root": "roots",
"berry": "berry"
},
"Variety": {
"CS": "Chinese Spring",
"Hold": "Holdfast",
"TAM": "TAM107",
"Banks": "Banks",
"Avoc": "Avocet S",
"Sevin": "Sevin",
"Bobw": "Bobwhite",
"GPC": "GPC RNAi Bobwhite",
"P271": "P271",
"CSNIL": "Chinese Spring NIL CSTP",
"HTS-1": "HTS-1",
"N9134": "N9134",
"synth": "synthetic hexaploid (mother Triticum turgidum ssp dicoccon accession PI94655, father Aegilops tauschii ssp strangulata accession AS2404)",
"CM": "CM-82036",
"CM_1": "NIL1 from CM-82036 BC5 in Remus",
"CM_2": "NIL2 from CM-82036 BC5 in Remus",
"CM_3": "NIL3 from CM-82036 BC5 in Remus",
"CM_4": "NIL4 from CM-82036 BC5 in Remus",
"Baxt": "Baxter -4A dormancy QTL",
"Chara": "Chara -4A dormancy QTL",
"Westo": "Westonia -4A dormancy QTL",
"Yipti": "Yipti +4A dormancy QTL",
"0362+": "NIL 0362 +4A dormancy QTL",
"0807+": "NIL 0807 +4A dormancy QTL",
"1038+": "NIL 1038 +4A dormancy QTL",
"1275+": "NIL 1275 +4A dormancy QTL",
"1516+": "NIL 1516 +4A dormancy QTL",
"0807-": "NIL 0807 -4A dormancy QTL",
"1038-": "NIL 1038 -4A dormancy QTL",
"1275-": "NIL 1275 -4A dormancy QTL",
"0362-": "NIL 0362 -4A dormancy QTL",
"1516-": "NIL 1516 -4A dormancy QTL",
"N1ATB": "Chinese Spring, N1AT1B",
"N1ATD": "Chinese Spring, N1AT1D",
"N1BTA": "Chinese Spring, N1BT1A",
"N1BTD": "Chinese Spring, N1BT1D",
"N1DTA": "Chinese Spring, N1DT1A",
"N1DTB": "Chinese Spring, N1DT1B",
"N5ATB": "Chinese Spring, N5AT5B",
"N5ATD": "Chinese Spring, N5AT5D",
"N5BTA": "Chinese Spring, N5BT5A",
"N5BTD": "Chinese Spring, N5BT5D",
"N5DTA": "Chinese Spring, N5DT5A",
"N5DTB": "Chinese Spring, N5DT5B",
"blackberry": "Blackberry",
"prestige": "Raspberry prestige"
}
},
"selectedFactors": {
"study": {
"Blackberry_ripe": true,
"Raspberry_ripe": true
},
"Age": {
"7d": true,
"see": true,
"14d": true,
"3_lea": true,
"24d": true,
"till": true,
"5_lea": true,
"1_sp": true,
"2_no": true,
"f_lea": true,
"anth": true,
"2dpa": true,
"4dpa": true,
"6dpa": true,
"8dpa": true,
"9dpa": true,
"10dpa": true,
"11dpa": true,
"12dpa": true,
"4+dpa": true,
"14dpa": true,
"15dpa": true,
"20dpa": true,
"25dpa": true,
"30dpa": true,
"35dpa": true,
"green": true,
"red": true,
"ripe": true
},
"High level age": {
"see": true,
"veg": true,
"repr": true
},
"High level stress-disease": {
"none": true,
"dis": true,
"abio": true,
"trans": true
},
"High level tissue": {
"spike": true,
"grain": true,
"le+sh": true,
"roots": true,
"berry": true
},
"High level variety": {
"CS": true,
"other": true,
"N_CS": true,
"Rg": true,
"Ri": true
},
"Stress-disease": {
"none": true,
"mo30h": true,
"mo50h": true,
"fu30h": true,
"fu50h": true,
"sr24h": true,
"sr48h": true,
"sr72h": true,
"sr6+d": true,
"pm24h": true,
"pm48h": true,
"pm72h": true,
"st4d": true,
"st10d": true,
"st13d": true,
"ds1h": true,
"ds6h": true,
"hs1h": true,
"hs6h": true,
"dhs1h": true,
"dhs6h": true,
"P-10d": true,
"GPC-": true
},
"Tissue": {
"grain": true,
"w_en": true,
"s_en": true,
"al_e": true,
"e_sc": true,
"sc": true,
"al": true,
"tc": true,
"pist": true,
"ps": true,
"sta": true,
"spike": true,
"s_let": true,
"see": true,
"shoot": true,
"lea": true,
"2_lea": true,
"f_lea": true,
"stem": true,
"root": true,
"berry": true
},
"Variety": {
"CS": true,
"Hold": true,
"TAM": true,
"Banks": true,
"Avoc": true,
"Sevin": true,
"Bobw": true,
"GPC": true,
"P271": true,
"CSNIL": true,
"HTS-1": true,
"N9134": true,
"synth": true,
"CM": true,
"CM_1": true,
"CM_2": true,
"CM_3": true,
"CM_4": true,
"Baxt": true,
"Chara": true,
"Westo": true,
"Yipti": true,
"0362+": true,
"0807+": true,
"1038+": true,
"1275+": true,
"1516+": true,
"0807-": true,
"1038-": true,
"1275-": true,
"0362-": true,
"1516-": true,
"N1ATB": true,
"N1ATD": true,
"N1BTA": true,
"N1BTD": true,
"N1DTA": true,
"N1DTB": true,
"N5ATB": true,
"N5ATD": true,
"N5BTA": true,
"N5BTD": true,
"N5DTA": true,
"N5DTB": true,
"blackberry": true,
"prestige": true
}
},
"defaultFactorSelection": {
"Age": false,
"High level stress-disease": true,
"High level age": true,
"High level tissue": true,
"High level variety": true,
"Stress-disease": false,
"study": false,
"Tissue": false,
"Variety": false
},
"defaultFactorOrder": [
"study",
"High level tissue",
"Tissue",
"High level age",
"Age",
"High level stress-disease",
"Stress-disease",
"High level variety",
"Variety"
],
"experiments": {
"1": {
"name": "Sample_1618_LIB19133_LDI16504",
"study": "1",
"group": "1"
},
"2": {
"name": "Sample_1618_LIB19134_LDI16505",
"study": "1",
"group": "1"
},
"3": {
"name": "Sample_1618_LIB19135_LDI16506",
"study": "1",
"group": "1"
},
"4": {
"name": "Sample_1618_LIB19136_LDI16507",
"study": "1",
"group": "2"
},
"5": {
"name": "Sample_1618_LIB19137_LDI16508",
"study": "1",
"group": "2"
},
"6": {
"name": "Sample_1618_LIB19138_LDI16509",
"study": "1",
"group": "2"
},
"7": {
"name": "Sample_1618_LIB19139_LDI16510",
"study": "1",
"group": "3"
},
"8": {
"name": "Sample_1618_LIB19140_LDI16511",
"study": "1",
"group": "3"
},
"9": {
"name": "Sample_1618_LIB19141_LDI16512",
"study": "1",
"group": "3"
},
"10": {
"name": "Sample_1636_LIB19419_LDI16762",
"study": "2",
"group": "4"
},
"11": {
"name": "Sample_1636_LIB19420_LDI16763",
"study": "2",
"group": "4"
},
"12": {
"name": "Sample_1636_LIB19421_LDI16764",
"study": "2",
"group": "4"
},
"13": {
"name": "Sample_1636_LIB19422_LDI16765",
"study": "2",
"group": "5"
},
"14": {
"name": "Sample_1636_LIB19423_LDI16766",
"study": "2",
"group": "5"
},
"15": {
"name": "Sample_1636_LIB19424_LDI16767",
"study": "2",
"group": "5"
},
"16": {
"name": "Sample_1636_LIB19425_LDI16768",
"study": "2",
"group": "6"
},
"17": {
"name": "Sample_1636_LIB19426_LDI16769",
"study": "2",
"group": "6"
},
"18": {
"name": "Sample_1636_LIB19427_LDI16770",
"study": "2",
"group": "6"
}
},
"groups": {
"1": {
"name": "1",
"description": "1",
"factors": {
"Age": "green",
"High level age": "repr",
"High level stress-disease": "none",
"High level tissue": "berry",
"High level variety": "Rg",
"Stress-disease": "none",
"Tissue": "berry",
"Variety": "blackberry",
"study": "Blackberry_ripe"
}
},
"2": {
"name": "2",
"description": "2",
"factors": {
"Age": "red",
"High level age": "repr",
"High level stress-disease": "none",
"High level tissue": "berry",
"High level variety": "Rg",
"Stress-disease": "none",
"Tissue": "berry",
"Variety": "blackberry",
"study": "Blackberry_ripe"
}
},
"3": {
"name": "3",
"description": "3",
"factors": {
"Age": "ripe",
"High level age": "repr",
"High level stress-disease": "none",
"High level tissue": "berry",
"High level variety": "Rg",
"Stress-disease": "none",
"Tissue": "berry",
"Variety": "blackberry",
"study": "Blackberry_ripe"
}
},
"4": {
"name": "4",
"description": "4",
"factors": {
"Age": "green",
"High level age": "repr",
"High level stress-disease": "none",
"High level tissue": "berry",
"High level variety": "Ri",
"Stress-disease": "none",
"Tissue": "berry",
"Variety": "prestige",
"study": "Raspberry_ripe"
}
},
"5": {
"name": "5",
"description": "5",
"factors": {
"Age": "red",
"High level age": "repr",
"High level stress-disease": "none",
"High level tissue": "berry",
"High level variety": "Ri",
"Stress-disease": "none",
"Tissue": "berry",
"Variety": "prestige",
"study": "Raspberry_ripe"
}
},
"6": {
"name": "6",
"description": "6",
"factors": {
"Age": "ripe",
"High level age": "repr",
"High level stress-disease": "none",
"High level tissue": "berry",
"High level variety": "Ri",
"Stress-disease": "none",
"Tissue": "berry",
"Variety": "prestige",
"study": "Raspberry_ripe"
}
}
}
}