auspice
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Web app for visualizing pathogen evolution
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{
"version": "v2",
"meta": {
"title": "Generic (small) feature-rich dataset for testing purposes",
"updated": "2023-03-28",
"build_url": "https://github.com/nextstrain/auspice",
"build_avatar": "https://avatars.githubusercontent.com/u/22159334?s=48&v=4",
"description": "# Markdown description",
"warning": "Achtung!",
"maintainers": [{"name": "The nextstrain team", "url": "https://nextstrain.org"}],
"genome_annotations": {"nuc": { "end": 100, "start": 1 }},
"filters": ["subtree"],
"panels": ["tree", "map", "entropy"],
"extensions": "any data structure!",
"geo_resolutions": [{"key": "subtree2", "title": "Subtree2 (demes)", "demes": {"red": {"latitude": 0, "longitude": -125}, "purple": {"latitude": -5, "longitude": -130}}}],
"colorings": [
{ "key": "num_date", "title": "Sampling date", "type": "temporal"},
{ "key": "subtree", "title": "subtree (Colour)", "type": "categorical", "scale": [["blue", "#2c7fb8"], ["green", "#78c679"]]},
{ "key": "subtree2", "title": "subtree 2 (Colour)", "type": "categorical", "scale": [["red", "#f03b20"], ["purple", "#8856a7"]]},
{ "key": "ord", "title": "ordinal (string)", "type": "ordinal"},
{ "key": "bool", "title": "Boolean / Binary", "type": "boolean"}
],
"display_defaults": {
"map_triplicate": false,
"geo_resolution": "subtree2",
"color_by": "subtree2",
"distance_measure": "div",
"layout": "rect",
"branch_label": "node_name",
"label": "node_name:alpha",
"tip_label": "subtree",
"stream_label": "river",
"transmission_lines": true,
"language": "en",
"sidebar": "open",
"panels": ["tree", "map", "entropy"]
},
"stream_labels": ["river"],
"data_provenance": [{"name": "test-data", "url": "https://github.com/nextstrain/auspice"}]
},
"tree": {
"name": "romeo",
"node_attrs": {"div": 0, "subtree": {"value": "green"}, "subtree2": {"value": "red"}, "ord": {"value": "A"}, "bool": {"value": "True"}, "num_date": {"value": 2000.00}},
"branch_attrs": {"labels": {"node_name": "romeo"}, "mutations": {"nuc": ["T50A"]}},
"children": [
{
"name": "alpha",
"node_attrs": {"div": 1, "subtree": {"value": "green"}, "subtree2": {"value": "red"}, "ord": {"value": "A"}, "bool": {"value": "True"},
"num_date": {"value": 2003.00}},
"branch_attrs": {"labels": {"node_name": "alpha", "river": "Nile"}, "mutations": {"nuc": []}},
"children": [
{
"name": "bravo",
"node_attrs": {"div": 2, "subtree": {"value": "green"}, "subtree2": {"value": "red"}, "ord": {"value": "C"}, "bool": {"value": "True"}, "num_date": {"value": 2005.00}},
"branch_attrs": {"labels": {"node_name": "bravo"}, "mutations": {"nuc": []}}
},
{
"name": "charlie",
"node_attrs": {"div": 2, "subtree": {"value": "green"}, "subtree2": {"value": "red"}, "num_date": {"value": 2012.00}},
"branch_attrs": {"labels": {"node_name": "charlie"}, "mutations": {"nuc": []}},
"children": [
{
"name": "delta",
"node_attrs": {"div": 3, "subtree": {"value": "green"}, "subtree2": {"value": "purple"}, "ord": {"value": "B"}, "bool": {"value": "1"}, "num_date": {"value": 2015.00}},
"branch_attrs": {"labels": {"node_name": "delta"}, "mutations": {"nuc": []}}
},
{
"name": "echo",
"node_attrs": {"div": 3, "subtree": {"value": "blue"}, "subtree2": {"value": "purple"}, "ord": {"value": "B"}, "bool": {"value": "True"}, "num_date": {"value": 2018.00}},
"branch_attrs": {"labels": {"node_name": "echo", "river": "Lena"}, "mutations": {"nuc": ["A50T"]}},
"children": [
{
"name": "foxtrot",
"node_attrs": {"div": 4, "subtree": {"value": "blue"}, "subtree2": {"value": "purple"}, "ord": {"value": "B"}, "bool": {"value": 0}, "num_date": {"value": 2019.00}},
"branch_attrs": {"labels": {"node_name": "foxtrot"}, "mutations": {"nuc": []}}
},
{
"name": "golf",
"node_attrs": {"div": 4, "subtree": {"value": "blue"}, "subtree2": {"value": "purple"}, "ord": {"value": "A"}, "bool": {"value": "False"}, "num_date": {"value": 2020.00}},
"branch_attrs": {"labels": {"node_name": "golf"}, "mutations": {"nuc": []}}
}
]
}
]
}
]
}
]
},
"root_sequence": "ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC"
}