auspice/auspice.js

Web app for visualizing pathogen evolution

#!/usr/bin/env node

const argparse = require('argparse');
const version = require('./src/version').version;
const view = require("./cli/view");
const build = require("./cli/build");
const develop = require("./cli/develop");
const convert = require("./cli/convert");

const parser = new argparse.ArgumentParser({
  version: version,
  addHelp: true,
  description: `Auspice version ${version}.`,
  epilog: `
  Auspice is an interactive visualisation tool for phylogenomic data.
  It can be used to display local datasets (see "auspice view -h" for details),
  or to build a customised version of the software (see "auspice build -h" for details).
  This is the software which powers the visualisations on nextstrain.org and auspice.us, among others.
  `
});

const subparsers = parser.addSubparsers({title: 'Auspice commands', dest: "subcommand"});
view.addParser(subparsers);
build.addParser(subparsers);
develop.addParser(subparsers);
convert.addParser(subparsers);

const args = parser.parseArgs();

if (args.verbose) global.AUSPICE_VERBOSE = true;

if (args.subcommand === "build") {
  build.run(args);
} else if (args.subcommand === "view") {
  view.run(args);
} else if (args.subcommand === "develop") {
  develop.run(args);
} else if (args.subcommand === "convert") {
  convert.run(args);
}

// console.dir(args);