auspice
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Web app for visualizing pathogen evolution
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</script></nav></div><div class="container mainContainer"><div class="wrapper"><div class="post"><header class="postHeader"><h1 class="postHeaderTitle">Changelog</h1></header><article><div><span><h2><a class="anchor" aria-hidden="true" id="version-221-2020-01-03"></a><a href="#version-221-2020-01-03" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 2.2.1 - 2020/01/03</h2>
<ul>
<li>Improve conversion functions to go between numeric & calendar dates. <a href="https://github.com/nextstrain/auspice/pull/839">See PR 839</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-220-2019-12-16"></a><a href="#version-220-2019-12-16" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 2.2.0 - 2019/12/16</h2>
<ul>
<li>Update datasets fetched via <code>npm run get-data</code> to reflect the move to v2 (unified) JSONs.</li>
<li>Allow datasets to define their own footer text via a string of markdown formatted text. Harcoded footers are now only used on the nextstrain.org domain and will be removed as they are incorporated into their respective builds. <a href="https://github.com/nextstrain/auspice/pull/834">See PR 834</a> and <a href="https://github.com/nextstrain/augur/pull/423">augur PR 423</a>.</li>
<li>Copy contributing docs into a top-level CONTRIBUTING.md file. <a href="https://github.com/nextstrain/auspice/pull/833">See PR 833</a>.</li>
<li>Include fonts & other CSS assets in the auspice build to improve the behavior of auspice when offline. <a href="https://github.com/nextstrain/auspice/pull/826">See PR 826</a>.</li>
<li>UI improvement: Display build source (if defined via <code>JSON.meta.build_url</code>), GitHub avatar (if build source is a GitHub repo) and maintainers as a byline under the title. <a href="https://github.com/nextstrain/auspice/pull/821">See PR 821</a>.</li>
<li>Performance improvement: Stream (v2) datasets between auspice server & auspice client. <a href="https://github.com/nextstrain/auspice/pull/825">See PR 825</a>.</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-210-2019-11-15"></a><a href="#version-210-2019-11-15" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 2.1.0 - 2019/11/15</h2>
<ul>
<li>Added support in the narratives to navigate via arrow keys. In addition to improved UI, this allows <code>decktape</code> to convert narratives to PDFs, and a guide has been added to the auspice docs for this.
<a href="https://github.com/nextstrain/auspice/pull/824">See PR 824</a>.</li>
<li>Added GISAID and GISRS logos to the footer for flu datasets.
<a href="https://github.com/nextstrain/auspice/pull/822">See PR 822</a>.</li>
<li>Bugfix: Fix the broken implementation of the "serverAddress" client customisation and update <a href="https://nextstrain.github.io/auspice/customise-client/api">the relevant documentation</a></li>
<li>Bugfix: Colorings in v2 JSONs were not being correctly ordered. They now maintain the order specified in the JSON.
The ordering of v1 JSONs is still sorted, as per auspice v1 behavior.
<a href="https://github.com/nextstrain/auspice/pull/823">See PR 823</a>.</li>
<li>Bugifx: The "download author data (TSV)" button no longer appears if no author information is defined in the dataset.</li>
<li>Minor auspice docs improvements.</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-203-2019-11-06"></a><a href="#version-203-2019-11-06" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 2.0.3 - 2019/11/06</h2>
<p>Bugfix: Correctly handle the <code>url</code> and <code>accession</code> of strains both in the tip-clicked info box and in the strain TSV download. <a href="https://github.com/nextstrain/auspice/pull/819">See PR 819</a>.</p>
<h2><a class="anchor" aria-hidden="true" id="version-202-2019-10-30"></a><a href="#version-202-2019-10-30" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 2.0.2 - 2019/10/30</h2>
<p>Bugfix: The ability to download per-strain metadata as a TSV file is now working again.
See <a href="https://github.com/nextstrain/auspice/issues/816">issue #816</a>.</p>
<h2><a class="anchor" aria-hidden="true" id="version-201-2019-10-25"></a><a href="#version-201-2019-10-25" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 2.0.1 - 2019/10/25</h2>
<p>Improved handling of traits associated with tips:</p>
<ul>
<li>Added documentation around how auspice displays missing or unknown trait values</li>
<li>It a trait is defined as a coloring, then use the provided title in the tree info boxes</li>
<li>Improve logic as to whether a value is inferred (i.e. display associate confidence) or known. See <a href="https://github.com/nextstrain/augur/issues/386">this issue</a> for more details.</li>
</ul>
<p>Fix a bug where two trees couldn't be colored by date.</p>
<h2><a class="anchor" aria-hidden="true" id="version-200-2019-10-21"></a><a href="#version-200-2019-10-21" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 2.0.0 - 2019/10/21</h2>
<p>Please see the <a href="https://nextstrain.github.io/auspice/releases/v2">release notes</a> for a full list of features and changes associated with auspice's v2 release.
Associated with the v2 release are much improved documentation at <a href="https://nextstrain.github.io/auspice">nextstrain.github.io/auspice</a></p>
<p>Here is a summary of the main changes:</p>
<ul>
<li>Pie charts to represent discrete variables on a map</li>
<li>New dataset JSON format:
<ul>
<li>Strings parsed unchanged</li>
<li>Both metadata and tree data in a single JSON</li>
<li>Gene / Genome definitions are now in GFF format</li>
<li>Changes to how node data is stored</li>
<li>Multiple maintainers</li>
<li>Continous, Categorical, Ordinal, and Boolean Color Scales</li>
</ul></li>
<li>More information in tree info boxes</li>
<li>Display of second trees</li>
<li>Display better dates on the tree axis</li>
<li>Map "reset zoom" button zooms to include all demes</li>
<li>Consistent colouring of missing data in the tree</li>
<li>Removal of Twitter & Google Analytics</li>
<li>Improvements in the entropy panel</li>
<li>Auspice responds to server redirects for datasets</li>
<li>Importing (server) code from Auspice</li>
<li>New Auspice subcommand: <code>auspice convert</code></li>
<li>Ability to show a "build" source URL in the sidebar</li>
<li><code>auspice view</code> uses a custom Auspice client if present</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1391-2019-10-21"></a><a href="#version-1391-2019-10-21" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.39.1 - 2019/10/21</h2>
<p>This release marks the final v1 release before auspice v2 is released.
Auspice v1 may still receive bug-fixes, and will be <a href="https://docs.npmjs.com/cli/dist-tag">npm-tagged</a> with "version1" so that it may be installed via <code>npm install --global auspice@version1</code>.</p>
<ul>
<li>Minor dependency version upgrades.</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1390-2019-09-12"></a><a href="#version-1390-2019-09-12" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.39.0 - 2019/09/12</h2>
<ul>
<li>Slight changes to the auspice splash page wording to remove the word "Locally".</li>
<li><code>getDataset</code> API calls may now return code 204 ("no content") resulting in the auspice splash page displayed without an error message.</li>
<li>Default styling of narrative text much improved.</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1382-2019-09-06"></a><a href="#version-1382-2019-09-06" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.38.2 - 2019/09/06</h2>
<ul>
<li>Fix footer for INRB Ebola builds.</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1381-2019-09-06"></a><a href="#version-1381-2019-09-06" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.38.1 - 2019/09/06</h2>
<ul>
<li>Update footer for INRB Ebola builds.
cd</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1380-2019-08-29"></a><a href="#version-1380-2019-08-29" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.38.0 - 2019/08/29</h2>
<ul>
<li>Add support for frequency projections. <a href="https://github.com/nextstrain/auspice/pull/777">See PR 777</a></li>
<li>Local Auspice servers listen on only localhost by default instead of all interfaces. <a href="https://github.com/nextstrain/auspice/pull/781">See PR 781</a></li>
<li>update dependencies</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1375-2019-08-09"></a><a href="#version-1375-2019-08-09" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.37.5 - 2019/08/09</h2>
<ul>
<li>Allo increased zoom levels in map. [See PR 765](<a href="https://github.com/nextstrain/auspice/pull/765">https://github.com/nextstrain/auspice/pull/765</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1374-2019-08-04"></a><a href="#version-1374-2019-08-04" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.37.4 - 2019/08/04</h2>
<ul>
<li>Improved layout of unrooted trees when zoomed into a clade. <a href="https://github.com/nextstrain/auspice/pull/754">See PR 754</a></li>
<li>Remove link to "deprecated" nextflu.org site from flu page footer.</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1373-2019-07-29"></a><a href="#version-1373-2019-07-29" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.37.3 - 2019/07/29</h2>
<ul>
<li>Reinstate github dataset link in sidebar for community builds</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1372-2019-07-20"></a><a href="#version-1372-2019-07-20" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.37.2 - 2019/07/20</h2>
<ul>
<li>Fix two bugs related to (a) "root" appearing as the selected clade in the URL and (b) applying filtering would remove the selected clade from the URL. See <a href="https://github.com/nextstrain/auspice/issues/744">issue #744</a> and <a href="https://github.com/nextstrain/auspice/pull/746">PR 746</a>.</li>
<li>Fix bug where auspice would crash if the JSON contained an "annotation" property but not a "annotation.nuc" key. See <a href="https://github.com/nextstrain/auspice/issues/732">issue #732</a></li>
<li>The Map panel title is now "Grography" when transmissions are not inferred. See <a href="https://github.com/nextstrain/auspice/issues/743">issue #743</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1371-2019-07-13"></a><a href="#version-1371-2019-07-13" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.37.1 - 2019/07/13</h2>
<ul>
<li>Fig a bug where "unknown" values of a discrete scales (e.g. "?") could be given a colour. They are now grey.</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1370-2019-07-09"></a><a href="#version-1370-2019-07-09" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.37.0 - 2019/07/09</h2>
<ul>
<li>Fix two bugs relating to narratives and the Map component. <a href="https://github.com/nextstrain/auspice/pull/736">See PR 736</a></li>
<li>Improve logic behind when to display tip labels on the tree</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1366-2019-05-18"></a><a href="#version-1366-2019-05-18" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.36.6 - 2019/05/18</h2>
<ul>
<li>Improve minor axis tick spacing on tree. <a href="https://github.com/nextstrain/auspice/pull/725">See PR 725</a></li>
<li>Entropy calculations ignore ambiguous bases <a href="https://github.com/nextstrain/auspice/pull/723">See PR 723</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1365-2019-04-17"></a><a href="#version-1365-2019-04-17" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.36.5 - 2019/04/17</h2>
<ul>
<li>Fix a bug in the initial rendering of the date slider. <a href="https://github.com/nextstrain/auspice/pull/713">See PR 713</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1364-2019-03-16"></a><a href="#version-1364-2019-03-16" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.36.4 - 2019/03/16</h2>
<ul>
<li>Fix map deme border coloring.</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1363-2019-03-11"></a><a href="#version-1363-2019-03-11" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.36.3 - 2019/03/11</h2>
<ul>
<li>Various map improvements, including transmission ribbons, improved initial map
bounds and improved deme circle sizing.
<a href="https://github.com/nextstrain/auspice/pull/712">See PR 712</a></li>
<li>Check mutation type against tree. (See PR 709)[<a href="https://github.com/nextstrain/auspice/pull/709]">https://github.com/nextstrain/auspice/pull/709]</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1362-2019-03-04"></a><a href="#version-1362-2019-03-04" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.36.2 - 2019/03/04</h2>
<ul>
<li>Update footer information. Don't display "live" footers for "community" URLs.</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1361-2019-02-27"></a><a href="#version-1361-2019-02-27" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.36.1 - 2019/02/27</h2>
<ul>
<li>Update npm packages identified as security vulnerabilities</li>
<li>Fixes a bug (only in v1.36.0) where, for some datasets, interacting with the tree would cause the app to crash. <a href="https://github.com/nextstrain/auspice/issues/708">Issue 708</a></li>
<li><code>auspice build</code> now exits (with non-zero exit code) if there are errors during webpack bundling</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1360-2019-02-25"></a><a href="#version-1360-2019-02-25" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.36.0 - 2019/02/25</h2>
<ul>
<li>Improve app load times using code splitting. <a href="https://github.com/nextstrain/auspice/pull/701">See PR 701</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1355-2019-02-08"></a><a href="#version-1355-2019-02-08" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.35.5 - 2019/02/08</h2>
<ul>
<li>Add acknowledgements to mumps page.</li>
<li>Preserve URL during 404. <a href="https://github.com/nextstrain/auspice/issues/700">Issue #700</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1354-2019-01-28"></a><a href="#version-1354-2019-01-28" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.35.4 - 2019/01/28</h2>
<ul>
<li>Restore download modal functionality. <a href="https://github.com/nextstrain/auspice/issues/699">Issue 699</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1353-2019-01-25"></a><a href="#version-1353-2019-01-25" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.35.3 - 2019/01/25</h2>
<ul>
<li>Show useful help message if port is in use. <a href="https://github.com/nextstrain/auspice/pull/694">See PR 694</a></li>
<li>Fixed a bug where URL query strings may become corrupted in certain cases. <a href="https://github.com/nextstrain/auspice/pull/695">See PR 695</a></li>
<li>Restore (deprecated) "npm run {server,dev}" commands. <a href="https://github.com/nextstrain/auspice/pull/692">See PR 692</a></li>
<li>Fix broken links in documentation. <a href="https://github.com/nextstrain/auspice/pull/690">See PR 690</a></li>
<li>Update WNV footer text</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1352-2019-01-16"></a><a href="#version-1352-2019-01-16" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.35.2 - 2019/01/16</h2>
<ul>
<li>Auspice is now extensible (at build stage), allowing customisations and serverless builds. <a href="https://github.com/nextstrain/auspice/pull/688">See PR 688</a></li>
<li>Documentation is now available via github pages -- <a href="https://nextstrain.github.io/auspice/">nextstrain.github.io/auspice</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1344-2019-01-15"></a><a href="#version-1344-2019-01-15" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.34.4 - 2019/01/15</h2>
<ul>
<li>Update mumps footer</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1343-2018-12-18"></a><a href="#version-1343-2018-12-18" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.34.3 - 2018/12/18</h2>
<ul>
<li>Don't display deme circle if lat/long is absent</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1342-2018-12-05"></a><a href="#version-1342-2018-12-05" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.34.2 - 2018/12/05</h2>
<ul>
<li>Update mumps footer</li>
<li>Modify the casing of how labels are displayed <a href="https://github.com/nextstrain/auspice/pull/685">See PR 685</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1341-2018-11-29"></a><a href="#version-1341-2018-11-29" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.34.1 - 2018/11/29</h2>
<ul>
<li>Small change to make the 'Second Tree' option appear when virus segments are named according to "segment1", "segment2" etcetera. <a href="https://github.com/nextstrain/auspice/pull/684">See PR 684</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1340-2018-11-19"></a><a href="#version-1340-2018-11-19" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.34.0 - 2018/11/19</h2>
<ul>
<li>Community builds are now sourced from githubusercontent, which is the official source for "raw" files from GitHub. <a href="https://github.com/nextstrain/auspice/pull/682">PR 682</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1330-2018-11-18"></a><a href="#version-1330-2018-11-18" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.33.0 - 2018/11/18</h2>
<ul>
<li>Gene names can now include <code>-</code> and <code>_</code>, as well as code improvements to genotype encoding/decoding -- <a href="https://github.com/nextstrain/auspice/pull/681">PR 681</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1320-2018-11-02"></a><a href="#version-1320-2018-11-02" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.32.0 - 2018/11/02</h2>
<ul>
<li>Allow <code>hidden</code> property on tree nodes -- <a href="https://github.com/nextstrain/auspice/pull/676">PR 676</a></li>
<li>Update packages & package.json metadata -- <a href="https://github.com/nextstrain/auspice/pull/677">PR 677</a> <a href="https://github.com/nextstrain/auspice/pull/678">PR 678</a> <a href="https://github.com/nextstrain/auspice/pull/679">PR 679</a></li>
<li>Restore hot-reloading ability for development (above PRs)</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1310-2018-10-29"></a><a href="#version-1310-2018-10-29" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.31.0 - 2018/10/29</h2>
<ul>
<li>Allow time-only trees or div-only trees -- <a href="https://github.com/nextstrain/auspice/pull/670">PR 670</a></li>
<li>Minor fixes to handle trees with missing data -- <a href="https://github.com/nextstrain/auspice/pull/673">PR 673</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1303-2018-09-19"></a><a href="#version-1303-2018-09-19" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.30.3 - 2018/09/19</h2>
<ul>
<li>Colours were sometimes inconsistent when two trees were displayed -- <a href="https://github.com/nextstrain/auspice/pull/665">PR 665</a></li>
<li>Clicking on a tip while two trees were displayed no longer causes a crash -- <a href="https://github.com/nextstrain/auspice/pull/666">PR 666</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1302-2018-09-07"></a><a href="#version-1302-2018-09-07" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.30.2 - 2018/09/07</h2>
<ul>
<li>Publish the package to the npm registry from the release branch automatically. [<a href="https://github.com/nextstrain/auspice/pull/660">#660</a>, <a href="https://github.com/nextstrain/auspice/pull/662">#662</a>]</li>
<li>Fix inability to run <code>npm</code> locally introduced by repo's <code>.npmrc</code> file. [<a href="https://github.com/nextstrain/auspice/issues/661">#661</a>]</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1301-2018-09-05"></a><a href="#version-1301-2018-09-05" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.30.1 - 2018/09/05</h2>
<h2><a class="anchor" aria-hidden="true" id="version-1300-2018-09-05"></a><a href="#version-1300-2018-09-05" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.30.0 - 2018/09/05</h2>
<ul>
<li>Auspice is now globally installable and published as a npm package <a href="https://www.npmjs.com/package/auspice">npmjs.com/package/auspice</a></li>
<li>AA entropy calculation bug fixed - <a href="https://github.com/nextstrain/auspice/pull/657">PR 657</a></li>
<li>Narrative scroll bars are fixed for Linux & Windows browsers - <a href="https://github.com/nextstrain/auspice/pull/653">PR 653</a></li>
<li>Tree legend placement improved - <a href="https://github.com/nextstrain/auspice/pull/650">PR 650</a></li>
<li><code>npm run start</code> is no longer deprecated</li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1290-2018-08-31"></a><a href="#version-1290-2018-08-31" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>version 1.29.0 - 2018/08/31</h2>
<ul>
<li>The visibility of nodes on the tree now more accurately reflects the selected date range - <a href="https://github.com/nextstrain/auspice/pull/644">PR 644</a></li>
<li>Info text is easier to read & the date range reflects the genomes in view - <a href="https://github.com/nextstrain/auspice/pull/639">PR 639</a></li>
</ul>
<h3><a class="anchor" aria-hidden="true" id="narrative-improvements"></a><a href="#narrative-improvements" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Narrative improvements</h3>
<ul>
<li>Toggle between narrative & interactive mode is much clearer - <a href="https://github.com/nextstrain/auspice/pull/648">PR 648</a></li>
<li>URL queries with no clade set zoom to the entire tree - <a href="https://github.com/nextstrain/auspice/pull/644">PR 644</a></li>
</ul>
<h2><a class="anchor" aria-hidden="true" id="version-1280-2018-08-25"></a><a href="#version-1280-2018-08-25" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3