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auspice

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Web app for visualizing pathogen evolution

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<!DOCTYPE html><html lang="en"><head><meta charSet="utf-8"/><meta http-equiv="X-UA-Compatible" content="IE=edge"/><title>Authentication · Auspice</title><meta name="viewport" content="width=device-width"/><meta name="generator" content="Docusaurus"/><meta name="description" content="While Auspice was designed to facilitate open data sharing and rapid dissemination of results, it may be necessary to authenticate certain datasets (or indeed the entire instance)."/><meta name="docsearch:language" content="en"/><meta property="og:title" content="Authentication · Auspice"/><meta property="og:type" content="website"/><meta property="og:url" content="https://nextstrain.github.io/auspice/"/><meta property="og:description" content="While Auspice was designed to facilitate open data sharing and rapid dissemination of results, it may be necessary to authenticate certain datasets (or indeed the entire instance)."/><meta property="og:image" content="https://nextstrain.github.io/auspice/img/icon.svg"/><meta name="twitter:card" content="summary"/><meta name="twitter:image" content="https://nextstrain.github.io/auspice/img/icon.svg"/><link rel="shortcut icon" href="/auspice/img/favicon.ico"/><link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/solarized-dark.min.css"/><script type="text/javascript" src="https://buttons.github.io/buttons.js"></script><script src="/auspice/js/scrollSpy.js"></script><link rel="stylesheet" href="/auspice/css/main.css"/><script src="/auspice/js/codetabs.js"></script></head><body class="sideNavVisible separateOnPageNav"><div class="fixedHeaderContainer"><div class="headerWrapper wrapper"><header><a href="/auspice/"><img class="logo" src="/auspice/img/logo-light.svg" alt="Auspice"/><h2 class="headerTitleWithLogo">Auspice</h2></a><div class="navigationWrapper navigationSlider"><nav class="slidingNav"><ul class="nav-site nav-site-internal"><li class="siteNavGroupActive"><a href="/auspice/introduction/overview" target="_self">Docs</a></li></ul></nav></div></header></div></div><div class="navPusher"><div class="docMainWrapper wrapper"><div class="docsNavContainer" id="docsNav"><nav class="toc"><div class="toggleNav"><section class="navWrapper wrapper"><div class="navBreadcrumb wrapper"><div class="navToggle" id="navToggler"><div class="hamburger-menu"><div class="line1"></div><div class="line2"></div><div class="line3"></div></div></div><h2><i></i><span>Using a Custom Server</span></h2><div class="tocToggler" id="tocToggler"><i class="icon-toc"></i></div></div><div class="navGroups"><div class="navGroup"><h3 class="navGroupCategoryTitle">Introduction</h3><ul class=""><li class="navListItem"><a class="navItem" href="/auspice/introduction/overview">Overview</a></li><li class="navListItem"><a class="navItem" href="/auspice/introduction/install">Install Auspice</a></li><li class="navListItem"><a class="navItem" href="/auspice/introduction/how-to-run">How to Run Auspice</a></li></ul></div><div class="navGroup"><h3 class="navGroupCategoryTitle">Advanced Functionality</h3><ul class=""><li class="navListItem"><a class="navItem" href="/auspice/advanced-functionality/second-trees">Displaying mutliple trees</a></li><li class="navListItem"><a class="navItem" href="/auspice/advanced-functionality/misc">Miscellaneous</a></li></ul></div><div class="navGroup"><h3 class="navGroupCategoryTitle">Customising Auspice</h3><ul class=""><li class="navListItem"><a class="navItem" href="/auspice/customise-client/introduction">Customising Auspice</a></li><li class="navListItem"><a class="navItem" href="/auspice/customise-client/api">Client Customisation API</a></li><li class="navListItem"><a class="navItem" href="/auspice/customise-client/requests">Requests Made from the Client</a></li></ul></div><div class="navGroup"><h3 class="navGroupCategoryTitle">Using a Custom Server</h3><ul class=""><li class="navListItem"><a class="navItem" href="/auspice/server/introduction">Auspice servers</a></li><li class="navListItem"><a class="navItem" href="/auspice/server/api">Server API</a></li><li class="navListItem navListItemActive"><a class="navItem" href="/auspice/server/authentication">Authentication</a></li></ul></div><div class="navGroup"><h3 class="navGroupCategoryTitle">Narratives</h3><ul class=""><li class="navListItem"><a class="navItem" href="/auspice/narratives/introduction">Communicating Results Using Narratives</a></li><li class="navListItem"><a class="navItem" href="/auspice/narratives/how-to-write">Writing a Narrative</a></li><li class="navListItem"><a class="navItem" href="/auspice/narratives/create-pdf">Converting a narrative to PDF</a></li></ul></div><div class="navGroup"><h3 class="navGroupCategoryTitle">Release Notes</h3><ul class=""><li class="navListItem"><a class="navItem" href="/auspice/releases/changelog">Changelog</a></li><li class="navListItem"><a class="navItem" href="/auspice/releases/v2">Auspice Version 2.0</a></li></ul></div><div class="navGroup"><h3 class="navGroupCategoryTitle">Contributing</h3><ul class=""><li class="navListItem"><a class="navItem" href="/auspice/contributing/overview">Contributing to Auspice</a></li></ul></div></div></section></div><script> var coll = document.getElementsByClassName('collapsible'); var checkActiveCategory = true; for (var i = 0; i < coll.length; i++) { var links = coll[i].nextElementSibling.getElementsByTagName('*'); if (checkActiveCategory){ for (var j = 0; j < links.length; j++) { if (links[j].classList.contains('navListItemActive')){ coll[i].nextElementSibling.classList.toggle('hide'); coll[i].childNodes[1].classList.toggle('rotate'); checkActiveCategory = false; break; } } } coll[i].addEventListener('click', function() { var arrow = this.childNodes[1]; arrow.classList.toggle('rotate'); var content = this.nextElementSibling; content.classList.toggle('hide'); }); } document.addEventListener('DOMContentLoaded', function() { createToggler('#navToggler', '#docsNav', 'docsSliderActive'); createToggler('#tocToggler', 'body', 'tocActive'); var headings = document.querySelector('.toc-headings'); headings && headings.addEventListener('click', function(event) { var el = event.target; while(el !== headings){ if (el.tagName === 'A') { document.body.classList.remove('tocActive'); break; } else{ el = el.parentNode; } } }, false); function createToggler(togglerSelector, targetSelector, className) { var toggler = document.querySelector(togglerSelector); var target = document.querySelector(targetSelector); if (!toggler) { return; } toggler.onclick = function(event) { event.preventDefault(); target.classList.toggle(className); }; } }); </script></nav></div><div class="container mainContainer"><div class="wrapper"><div class="post"><header class="postHeader"><h1 class="postHeaderTitle">Authentication</h1></header><article><div><span><p>While Auspice was designed to facilitate open data sharing and rapid dissemination of results, it may be necessary to authenticate certain datasets (or indeed the entire instance). Auspice itself contains no authentication ability, but if you are running a server then it is possible -- and relatively simple -- to build in authentication.</p> <p>The exact implementation details are beyond the scope of this documentation, but the following provides an outline of the approach we have implemented for <a href="https://nextstrain.org">nextstrain.org</a>.</p> <h2><a class="anchor" aria-hidden="true" id="using-the-server-to-verify-cookies"></a><a href="#using-the-server-to-verify-cookies" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Using the Server to Verify Cookies</h2> <p><img src="/auspice/assets/authentication.svg" alt="auth-cartoon"></p> <p>The server can examine cookies sent with each API request (or, the request for <code>index.html</code>) to verify the status of a user. This allows the server to examine the cookie and:</p> <ul> <li>Deliver different available datasets depending on the cookie</li> <li>Accept or reject specific dataset requests depending on the cookie</li> <li>Redirect requests to a custom authentication page (referred to as <code>login.html</code>) <ul> <li>If this is from a request for <code>index.html</code> (i.e. you want to secure the entire site), then the redirect is simple</li> <li>For redirects from an API request, you may have to respond with a 302 or 303 redirect header.</li> </ul></li> </ul> <p>It is this custom authentication page which can process a login and set a cookie appropriately. As Auspice is served from the same domain, the cookie should remain with all requests.</p> <p>Implementing authentication is beyond the scope of this documentation, but we can recommend <a href="http://www.passportjs.org">PassportJS</a> and <a href="https://auth0.com/">Auth0</a>, the latter of which allows you to easily use single sign-on strategies.</p> </span></div></article></div><div class="docLastUpdate"><em>Last updated on 10/17/2019</em></div><div class="docs-prevnext"><a class="docs-prev button" href="/auspice/server/api"><span class="arrow-prev"></span><span>Server API</span></a><a class="docs-next button" href="/auspice/narratives/introduction"><span>Communicating Results Using Narratives</span><span class="arrow-next"></span></a></div></div></div><nav class="onPageNav"><ul class="toc-headings"><li><a href="#using-the-server-to-verify-cookies">Using the Server to Verify Cookies</a></li></ul></nav></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><a href="/auspice/"><img style="padding-left:20px" src="/auspice/img/logo-light.svg" alt="Auspice" width="66" height="58"/></a></div><div><h5>External Links</h5><a href="https://github.com/nextstrain/auspice">GitHub repo</a><a href="https://www.npmjs.com/package/auspice">NPM package</a><a href="https://nextstrain.org">Nextstrain</a></div><div><h5>Contact Us</h5><a href="mailto:hello@nextstrain.org">email</a><a href="https://twitter.com/hamesjadfield">twitter</a></div></section><section class="copyright">Website built by <a href="https://twitter.com/hamesjadfield">James Hadfield</a> using <a href="https://docusaurus.io">Docusaurus</a></section><section class="copyright">If you use auspice, please cite <a href="https://doi.org/10.1093/bioinformatics/bty407">Hadfield et al., 2018</a></section><section class="copyright">Copyright © 2014-2020 Richard Neher &amp; Trevor Bedford</section></footer></div></body></html>