auspice
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Web app for visualizing pathogen evolution
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<html lang="en"><head><meta charSet="utf-8"/><meta http-equiv="X-UA-Compatible" content="IE=edge"/><title>Auspice · Interactive exploration of phylodynamic & phylogenomic data.</title><meta name="viewport" content="width=device-width"/><meta name="generator" content="Docusaurus"/><meta name="description" content="Interactive exploration of phylodynamic & phylogenomic data."/><meta name="docsearch:language" content="en"/><meta property="og:title" content="Auspice · Interactive exploration of phylodynamic & phylogenomic data."/><meta property="og:type" content="website"/><meta property="og:url" content="https://nextstrain.github.io/auspice/"/><meta property="og:description" content="Interactive exploration of phylodynamic & phylogenomic data."/><meta property="og:image" content="https://nextstrain.github.io/auspice/img/icon.svg"/><meta name="twitter:card" content="summary"/><meta name="twitter:image" content="https://nextstrain.github.io/auspice/img/icon.svg"/><link rel="shortcut icon" href="/auspice/img/favicon.ico"/><link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/solarized-dark.min.css"/><script type="text/javascript" src="https://buttons.github.io/buttons.js"></script><script src="/auspice/js/scrollSpy.js"></script><link rel="stylesheet" href="/auspice/css/main.css"/><script src="/auspice/js/codetabs.js"></script></head><body><div class="fixedHeaderContainer"><div class="headerWrapper wrapper"><header><a href="/auspice/"><img class="logo" src="/auspice/img/logo-light.svg" alt="Auspice"/><h2 class="headerTitleWithLogo">Auspice</h2></a><div class="navigationWrapper navigationSlider"><nav class="slidingNav"><ul class="nav-site nav-site-internal"><li class=""><a href="/auspice/introduction/overview" target="_self">Docs</a></li></ul></nav></div></header></div></div><div class="navPusher"><div><div class="homeContainer"><div class="homeSplashFade"><div class="wrapper homeWrapper"><div class="splashTitle"><div class="projectLogo" style="bottom:auto;top:100px"><img src="/auspice/img/logo-light.svg" style="max-height:100px" alt="Project Logo"/></div><h2 class="projectTitle">Auspice<small>Interactive exploration of phylodynamic & phylogenomic data.</small></h2><div class="section promoSection"><div class="promoRow"><div class="pluginRowBlock"><div style="font-size:90%;line-height:140%"><div><span><p>Communicating scientific results while also allowing interrogation of the underlying data is an integral part of the scientific process.
Current scientific publishing practices hinder both the rapid dissemination of epidemiologically relevant results and the ability to easily interact with the data which was used to draw the inferences.
These shortcomings motivated the <a href="https://nextstrain.org">nextstrain</a> project, for which auspice was initially devloped.</p>
<p>Auspice is software to display beautiful interactive visualisations of phylogenomic data.
It can be run on your computer or integrated into websites.
It allows easy customisation of aesthetics and functionality, and powers the visualisations on <a href="https://nextstrain.org">nextstrain.org</a>.</p>
</span></div></div></div></div></div></div><img class="splashImage" alt="splash image" src="/auspice/img/splash.png"/><div class="container highlightBackground paddingBottom paddingTop"><div class="wrapper"><div class="gridBlock"><div class="blockElement alignCenter fourByGridBlock"><div class="blockContent"><h2>Get started</h2><div><span><p>Learn how to install auspice locally get up and running visualising phylogenomic data</p>
</span></div><div class="pluginWrapper buttonWrapper" style="padding-top:30px"><a class="button undefined" href="/auspice/introduction/install" target="_self">Installation</a></div></div></div><div class="blockElement alignCenter fourByGridBlock"><div class="blockContent"><h2>Narratives</h2><div><span><p>Instead of simply presenting the data for someone to explore, use auspice to tell a story where <em>you</em> control what visualisation is presented.</p>
</span></div><div class="pluginWrapper buttonWrapper" style="padding-top:30px"><a class="button undefined" href="/auspice/narratives/introduction" target="_self">writing narratives</a></div></div></div><div class="blockElement alignCenter fourByGridBlock"><div class="blockContent"><h2>What's new?</h2><div><span><p>We've just released version 2 of auspice with lots of new things (this website being one of them!) Click here for the release notes.</p>
</span></div><div class="pluginWrapper buttonWrapper" style="padding-top:30px"><a class="button undefined" href="/auspice/releases/v2" target="_self">Version 2</a></div></div></div></div></div></div><div style="min-height:80px"></div><div class="container paddingBottom paddingTop"><div class="wrapper"><div class="iconsRow"><a href="https://nextstrain.org/" target="_blank" rel="noopener noreferrer"><img alt="logo" width="50" src="/auspice/img/nextstrain.png"/></a><a href="http://www.fredhutch.org/" target="_blank" rel="noopener noreferrer"><img alt="logo" width="75" src="/auspice/img/fred-hutch-logo-small.png"/></a><a href="http://www.eb.tuebingen.mpg.de/" target="_blank" rel="noopener noreferrer"><img alt="logo" width="65" src="/auspice/img/max-planck-logo.png"/></a><a href="https://www.nih.gov/" target="_blank" rel="noopener noreferrer"><img alt="logo" width="52" src="/auspice/img/nih-logo.jpg"/></a><a href="https://erc.europa.eu/" target="_blank" rel="noopener noreferrer"><img alt="logo" width="60" src="/auspice/img/erc-logo.jpg"/></a><a href="https://www.openscienceprize.org/" target="_blank" rel="noopener noreferrer"><img alt="logo" width="82" src="/auspice/img/osp-logo-small.png"/></a><a href="http://biozentrum.org/" target="_blank" rel="noopener noreferrer"><img alt="logo" width="85" src="/auspice/img/bz-logo.png"/></a></div></div></div></div></div></div></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><a href="/auspice/"><img style="padding-left:20px" src="/auspice/img/logo-light.svg" alt="Auspice" width="66" height="58"/></a></div><div><h5>External Links</h5><a href="https://github.com/nextstrain/auspice">GitHub repo</a><a href="https://www.npmjs.com/package/auspice">NPM package</a><a href="https://nextstrain.org">Nextstrain</a></div><div><h5>Contact Us</h5><a href="mailto:hello@nextstrain.org">email</a><a href="https://twitter.com/hamesjadfield">twitter</a></div></section><section class="copyright">Website built by <a href="https://twitter.com/hamesjadfield">James Hadfield</a> using <a href="https://docusaurus.io">Docusaurus</a></section><section class="copyright">If you use auspice, please cite <a href="https://doi.org/10.1093/bioinformatics/bty407">Hadfield et al., 2018</a></section><section class="copyright">Copyright © 2014-2020 Richard Neher & Trevor Bedford</section></footer></div></body></html>