auspice
Version:
Web app for visualizing pathogen evolution
1 lines • 228 kB
JavaScript
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i.a.createElement("g",{id:"ItemsContainer"},i.a.createElement("rect",{width:"290",height:this.getSVGHeight(),fill:"rgba(255,255,255,.85)"}),i.a.createElement("g",{id:"Items",transform:"translate(0,20)"},t))}},{key:"getStyles",value:function(){return{svg:{position:"absolute",left:5,top:26,borderRadius:4,zIndex:1e3}}}},{key:"render",value:function(){var e=this;if(!this.props.colorScale)return null;var t=this.getStyles();return i.a.createElement("svg",{id:"TreeLegendContainer",width:this.getSVGWidth(),height:this.getSVGHeight(),style:t.svg},this.legendItems(),i.a.createElement("g",{id:"TitleAndChevron",onClick:function(){return e.toggleLegend()},style:{cursor:"pointer"}},this.legendTitle(),this.legendChevron()))}}])&&R(n.prototype,r),o&&R(n,o),t}())||r,W=n(22),G=n(85),H=n(460),q=function(e){return 1===e["stroke-width"]?0:e["stroke-width"]>6?e["stroke-width"]+6:2*e["stroke-width"]},U=(n(108),function(e){var t=e.n.hidden;return 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e/n<2?n/=5:e/n<5&&(n/=2),n},ee=function(e){return"aa"===e?"10px":"14px"},te=function(e){return"aa"===e?"500":"700"},ne=function(e,t,n){if("clade"===e)return"visible";return function(e){return e.n.tipCount>.05*n&&"rect"===t?"visible":"hidden"}},re=function(e,t){var n=this;this.grid=!1,this.attributes=["r","cx","cy","id","class","d"],this.params={regressionStroke:u.a,regressionWidth:6,majorGridStroke:"#CCC",majorGridWidth:2,minorGridStroke:"#DDD",minorGridWidth:1,tickLabelSize:12,tickLabelFill:u.a,minorTicksTimeTree:3,minorTicks:4,orientation:[1,1],margins:{left:25,right:15,top:10,bottom:30},showGrid:!0,fillSelected:"#A73",radiusSelected:5,branchStroke:"#AAA",branchStrokeWidth:2,tipStroke:"#AAA",tipFill:"#CCC",tipStrokeWidth:1,tipRadius:4,fontFamily:u.b,branchLabelKey:!1,branchLabelFont:u.b,branchLabelFill:"#777",branchLabelFontWeight:500,branchLabelPadX:8,branchLabelPadY:5,tipLabels:!0,tipLabelFont:u.b,tipLabelFill:"#555",tipLabelPadX:8,tipLabelPadY:2,mapToScreenDebounceTime:500,tipLabelFontSizeL1:8,tipLabelFontSizeL2:10,tipLabelFontSizeL3:12,tipLabelBreakL1:75,tipLabelBreakL2:50,tipLabelBreakL3:25},this.groups={},this.debugId=t,this.nodes=e.map(function(e){var t={that:n,n:e,x:0,y:0,terminal:void 0===e.children,inView:void 0===e.inView||e.inView};return e.shell=t,t}),this.numberOfTips=Object(G.c)(this.nodes),Object(G.d)(this.nodes),this.xScale=Object(W.a)(),this.yScale=Object(W.a)(),this.zoomNode=this.nodes[0],this.strainToNode={},this.nodes.forEach(function(e){n.strainToNode[e.n.strain]=e})};re.prototype.change=function(e){var t,n,r=e.changeColorBy,o=void 0!==r&&r,i=e.changeVisibility,a=void 0!==i&&i,s=e.changeTipRadii,l=void 0!==s&&s,c=e.changeBranchThickness,u=void 0!==c&&c,p=e.showConfidences,h=void 0!==p&&p,d=e.removeConfidences,f=void 0!==d&&d,m=e.zoomIntoClade,y=void 0!==m&&m,b=e.svgHasChangedDimensions,g=void 0!==b&&b,v=e.newDistance,w=void 0===v?void 0:v,S=e.newLayout,O=void 0===S?void 0:S,E=e.updateLayout,x=void 0===E?void 0:E,k=e.newBranchLabellingKey,T=void 0===k?void 0:k,C=e.branchStroke,j=void 0===C?void 0:C,_=e.tipStroke,P=void 0===_?void 0:_,L=e.fill,D=void 0===L?void 0:L,M=e.visibility,N=void 0===M?void 0:M,B=e.tipRadii,I=void 0===B?void 0:B,R=e.branchThickness,A=void 0===R?void 0:R,z=new Set,F={},V=new Set,W=O,H=500;Date.now()-this.timeLastRenderRequested<1e3&&(H=0),o&&(z.add(".branch").add(".tip").add(".conf"),V.add("stroke").add("fill"),F.branchStroke=j,F.tipStroke=P,F.fill=D),a&&(z.add(".tip").add(".tipLabel"),V.add("visibility").add("cursor"),F.visibility=N),l&&(z.add(".tip"),V.add("r"),F.r=I),u&&(z.add(".branch").add(".conf"),V.add("stroke-width"),F["stroke-width"]=A),(w||O||x||y||g)&&(z.add(".tip").add(".branch.S").add(".branch.T").add(".branch"),z.add(".vaccineCross").add(".vaccineDottedLine").add(".conf"),z.add(".branchLabel").add(".tipLabel"),z.add(".grid").add(".regression"),V.add("cx").add("cy").add("d").add("opacity").add("visibility")),t=this.nodes,n=F,t.forEach(function(e,t){for(var r in e.update=!1,n){var o=n[r][t];o!==e[r]&&(e[r]=o,e.update=!0)}}),y&&(this.nodes.forEach(function(e){e.inView=!1,e.update=!0}),this.zoomNode=y.terminal?y.parent:y,Object(G.b)(this.zoomNode,function(e){e.inView=!0})),g&&this.nodes.forEach(function(e){e.update=!0}),w&&this.setDistance(w),(w||O||x)&&this.setLayout(O||this.layout),(V.has(["stroke-width"])||w||O||x||y||g)&&this.mapToScreen();var q={removeConfidences:f,showConfidences:h,newBranchLabellingKey:T};q.timeSliceHasPotentiallyChanged=a||w,W?this.modifySVGInStages(z,V,H,1e3):this.modifySVG(z,V,H,q),this.timeLastRenderRequested=Date.now()},re.prototype.modifySVG=function(e,t,n,r){var o,i=this,a=[".tip",".vaccineDottedLine",".vaccineCross",".branch"];if(e.has(".branch.S")||e.has(".branch.T")){var s=e.has(".branch");s&&a.splice(a.indexOf(".branch"),1),[".S",".T"].forEach(function(r,a){e.has(".branch".concat(r))&&(o=s?function(e){Y(".branch",t)(e),e.attr("d",function(e){return e.branch[a]})}:function(e){e.attr("d",function(e){return e.branch[a]})},J(i.svg,".branch".concat(r),o,n))})}a.forEach(function(r){e.has(r)&&(o=Y(r,t),J(i.svg,r,o,n))}),e.has(".branchLabel")&&this.updateBranchLabels(n),e.has(".tipLabel")&&this.updateTipLabels(),e.has(".grid")&&(this.grid&&"unrooted"!==this.layout?this.addGrid():this.hideGrid()),e.has(".regression")&&(this.removeRegression(),"clock"===this.layout&&"num_date"===this.distance&&this.drawRegression()),r.removeConfidences&&this.confidencesInSVG?this.removeConfidence():r.showConfidences&&!this.confidencesInSVG?this.drawConfidence():e.has(".conf")&&this.confidencesInSVG&&("rect"===this.layout&&"num_date"===this.distance?(o=Y(".conf",t),J(this.svg,".conf",o,n)):this.removeConfidence()),r.timeSliceHasPotentiallyChanged&&this.addTemporalSlice(),r.newBranchLabellingKey&&(this.removeBranchLabels(),"none"!==r.newBranchLabellingKey&&this.drawBranchLabels(r.newBranchLabellingKey))},re.prototype.modifySVGInStages=function(e,t,n,r){var o=this;e.delete(".tip"),this.hideGrid();var i=0,a=function(){o.drawBranches(),o.params.showGrid&&o.addGrid(),o.svg.selectAll(".tip").remove(),o.drawTips(),o.updateTipLabels(),o.vaccines&&o.drawVaccines(),o.addTemporalSlice(),"clock"===o.layout&&"num_date"===o.distance&&o.drawRegression(),e.has(".branchLabel")&&o.drawBranchLabels(o.params.branchLabelKey)};this.confidencesInSVG=!1,this.svg.selectAll(X(e).join(", ")).transition().duration(n).style("opacity",0).remove().on("start",function(){return i++}).on("end",function(){if(!--i){var e=Y(".tip",t);J(o.svg,".tip",e,r),setTimeout(a,r)}}),this.removeTemporalSlice(),n||Object(H.d)()},re.prototype.render=function(e,t,n,r,o,i,a,s,l,c,u,p,h,d){var f=this;this.svg=e,this.params=Object.assign(this.params,r),this.callbacks=o,this.vaccines=l?l.map(function(e){return e.shell}):void 0,this.dateRange=d,this.setDistance(n),this.setLayout(t),this.mapToScreen(),this.nodes.forEach(function(e,t){e.branchStroke=c[t],e.tipStroke=u[t],e.fill=p[t],e.visibility=a[t],e["stroke-width"]=i[t],e.r=h?h[t]:f.params.tipRadius}),this.params.showGrid&&(this.addGrid(),this.addTemporalSlice()),this.drawBranches(),this.drawTips(),this.params.branchLabelKey&&this.drawBranchLabels(this.params.branchLabelKey),this.vaccines&&this.drawVaccines(),"clock"===this.layout&&"num_date"===this.distance&&this.drawRegression(),this.confidencesInSVG=!1,s&&this.drawConfidence(),this.updateTipLabels(),this.timeLastRenderRequested=Date.now()},re.prototype.clearSVG=function(){this.svg.selectAll("*").remove()},re.prototype.drawTips=function(){var e=this.params;"tips"in this.groups||(this.groups.tips=this.svg.append("g").attr("id","tips")),this.groups.tips.selectAll(".tip").data(this.nodes.filter(function(e){return e.terminal})).enter().append("circle").attr("class","tip").attr("id",function(e){return"tip_"+e.n.clade}).attr("cx",function(e){return e.xTip}).attr("cy",function(e){return e.yTip}).attr("r",function(e){return e.r}).on("mouseover",this.callbacks.onTipHover).on("mouseout",this.callbacks.onTipLeave).on("click",this.callbacks.onTipClick).style("pointer-events","auto").style("visibility",function(e){return e.visibility===b.NODE_VISIBLE?"visible":"hidden"}).style("fill",function(t){return t.fill||e.tipFill}).style("stroke",function(t){return t.tipStroke||e.tipStroke}).style("stroke-width",function(){return e.tipStrokeWidth}).style("cursor","pointer")},re.prototype.drawBranches=function(){var e=this.params;"branchTee"in this.groups||(this.groups.branchTee=this.svg.append("g").attr("id","branchTee")),"clock"===this.layout||"unrooted"===this.layout?this.groups.branchTee.selectAll("*").remove():this.groups.branchTee.selectAll(".branch").data(this.nodes.filter(function(e){return!e.terminal})).enter().append("path").attr("class","branch T").attr("id",function(e){return"branch_T_"+e.n.clade}).attr("d",function(e){return e.branch[1]}).style("stroke",function(t){return t.branchStroke||e.branchStroke}).style("stroke-width",function(t){return t["stroke-width"]||e.branchStrokeWidth}).style("fill","none").style("pointer-events","auto"),"branchStem"in this.groups||(this.groups.branchStem=this.svg.append("g").attr("id","branchStem")),this.groups.branchStem.selectAll(".branch").data(this.nodes).enter().append("path").attr("class","branch S").attr("id",function(e){return"branch_S_"+e.n.clade}).attr("d",function(e){return e.branch[0]}).style("stroke",function(t){return t.branchStroke||e.branchStroke}).style("stroke-linecap","round").style("stroke-width",function(e){return e["stroke-width"]+"px"||!1}).style("fill","none").style("visibility",U).style("cursor",function(e){return e.visibility===b.NODE_VISIBLE?"pointer":"default"}).style("pointer-events","auto").on("mouseover",this.callbacks.onBranchHover).on("mouseout",this.callbacks.onBranchLeave).on("click",this.callbacks.onBranchClick)},re.prototype.drawVaccines=function(){this.vaccines&&this.vaccines.length&&("vaccines"in this.groups||(this.groups.vaccines=this.svg.append("g").attr("id","vaccines")),this.groups.vaccines.selectAll(".vaccineCross").data(this.vaccines).enter().append("path").attr("class","vaccineCross").attr("d",function(e){return e.vaccineCross}).style("stroke","#333").style("stroke-width",2*this.params.branchStrokeWidth).style("fill","none").style("cursor","pointer").style("pointer-events","auto").on("mouseover",this.callbacks.onTipHover).on("mouseout",this.callbacks.onTipLeave).on("click",this.callbacks.onTipClick))},re.prototype.drawRegression=function(){var e=this.yScale(this.regression.intercept+this.xScale.domain()[0]*this.regression.slope),t=this.yScale(this.regression.intercept+this.xScale.domain()[1]*this.regression.slope),n="M "+this.xScale.range()[0].toString()+" "+e.toString()+" L "+this.xScale.range()[1].toString()+" "+t.toString();"clockRegression"in this.groups||(this.groups.clockRegression=this.svg.append("g").attr("id","clockRegression")),this.groups.clockRegression.append("path").attr("d",n).attr("class","regression").style("fill","none").style("visibility","visible").style("stroke",this.params.regressionStroke).style("stroke-width",this.params.regressionWidth),this.groups.clockRegression.append("text").text("rate estimate: ".concat(this.regression.slope.toExponential(2)," subs per site per year")).attr("class","regression").attr("x",this.xScale.range()[1]/2-75).attr("y",this.yScale.range()[0]+50).style("fill",this.params.regressionStroke).style("font-size",this.params.tickLabelSize+8).style("font-weight",400).style("font-family",this.params.fontFamily)},re.prototype.removeRegression=function(){"clockRegression"in this.groups&&this.groups.clockRegression.selectAll("*").remove()},re.prototype.setDistance=function(e){this.nodes.forEach(function(e){e.update=!0}),this.distance=void 0===e?"div":e;var t=this.distance;this.nodes.forEach(function(e){e.depth=e.n.attr[t],e.pDepth=e.n.parent.attr[t],e.n.attr[t+"_confidence"]?e.conf=e.n.attr[t+"_confidence"]:e.conf=[e.depth,e.depth]}),this.vaccines&&this.vaccines.forEach(function(e){e.crossDepth=e.depth})},re.prototype.setLayout=function(e){void 0!==e&&e===this.layout||this.nodes.forEach(function(e){e.update=!0}),this.layout=void 0===e?"rect":e,"rect"===this.layout?this.rectangularLayout():"clock"===this.layout?this.timeVsRootToTip():"radial"===this.layout?this.radialLayout():"unrooted"===this.layout&&this.unrootedLayout()},re.prototype.rectangularLayout=function(){this.nodes.forEach(function(e){e.y=e.n.yvalue,e.x=e.depth,e.px=e.pDepth,e.py=e.y}),this.vaccines&&this.vaccines.forEach(function(e){e.xCross=e.crossDepth,e.yCross=e.y})},re.prototype.timeVsRootToTip=function(){this.nodes.forEach(function(e){e.y=e.n.attr.div,e.x=e.n.attr.num_date,e.px=e.n.parent.attr.num_date,e.py=e.n.parent.attr.div}),this.vaccines&&this.vaccines.forEach(function(e){e.xCross=e.x,e.yCross=e.y});var e=this.numberOfTips,t=this.nodes[0].depth,n=Object(Z.i)(this.nodes.filter(function(e){return e.terminal}).map(function(e){return e.y*(e.depth-t)}))/e/(Object(Z.i)(this.nodes.filter(function(e){return e.terminal}).map(function(e){return(e.depth-t)*(e.depth-t)}))/e),r=-t*n;this.regression={slope:n,intercept:r}},re.prototype.unrootedLayout=function(){Object(G.a)(this.nodes[0]);var e=this.nodes[0].leafCount;this.nodes.forEach(function(e){e.branchLength=e.depth-e.pDepth}),this.nodes[0].x=0,this.nodes[0].y=0,this.nodes[0].px=0,this.nodes[0].py=0,this.nodes[0].w=2*Math.PI,this.nodes[0].tau=0;for(var t=1.5*Math.PI,n=0;n<this.nodes[0].children.length;n++)this.nodes[0].children[n].px=0,this.nodes[0].children[n].py=0,this.nodes[0].children[n].w=2*Math.PI*this.nodes[0].children[n].leafCount/e,this.nodes[0].children[n].tau=t,t+=this.nodes[0].children[n].w,Q(this.nodes[0].children[n],e);this.vaccines&&this.vaccines.forEach(function(e){var t=e.crossDepth-e.depth;e.xCross=e.px+t*Math.cos(e.tau+.5*e.w),e.yCross=e.py+t*Math.sin(e.tau+.5*e.w)})},re.prototype.radialLayout=function(){var e=this,t=this.numberOfTips,n=this.nodes[0].depth;this.nodes.forEach(function(e){var r=1.9*Math.PI*e.yRange[0]/t,o=1.9*Math.PI*e.yRange[1]/t;e.angle=1.9*Math.PI*e.n.yvalue/t,e.y=(e.depth-n)*Math.cos(e.angle),e.x=(e.depth-n)*Math.sin(e.angle),e.py=e.y*(e.pDepth-n)/(e.depth-n+1e-15),e.px=e.x*(e.pDepth-n)/(e.depth-n+1e-15),e.yCBarStart=(e.depth-n)*Math.cos(r),e.xCBarStart=(e.depth-n)*Math.sin(r),e.yCBarEnd=(e.depth-n)*Math.cos(o),e.xCBarEnd=(e.depth-n)*Math.sin(o),e.smallBigArc=Math.abs(o-r)>1*Math.PI}),this.vaccines&&this.vaccines.forEach(function(t){"div"===e.distance?(t.xCross=t.x,t.yCross=t.y):(t.xCross=(t.crossDepth-n)*Math.sin(t.angle),t.yCross=(t.crossDepth-n)*Math.cos(t.angle))})},re.prototype.setScales=function(e){var t=parseInt(this.svg.attr("width"),10),n=parseInt(this.svg.attr("height"),10);if("radial"===this.layout||"unrooted"===this.layout){var r=t-(e.left||0)-(e.right||0),o=n-(e.top||0)-(e.top||0),i=Object(Z.f)([r,o]),a=r-i,s=o-i;this.xScale.range([.5*a+e.left||0,t-.5*a-(e.right||0)]),this.yScale.range([.5*s+e.top||0,n-.5*s-(e.bottom||0)])}else this.params.orientation[0]>0?this.xScale.range([e.left||0,t-(e.right||0)]):this.xScale.range([t-(e.right||0),e.left||0]),this.params.orientation[1]>0?this.yScale.range([e.top||0,n-(e.bottom||0)]):this.yScale.range([n-(e.bottom||0),e.top||0])},re.prototype.mapToScreen=function(){var e=this,t={left:this.params.margins.left,right:this.params.margins.right,top:this.params.margins.top,bottom:this.params.margins.bottom},n=this.nodes.filter(function(e){return e.terminal}).filter(function(e){return e.inView});if(n.length<this.params.tipLabelBreakL1){var r=this.params.tipLabelFontSizeL1;n.length<this.params.tipLabelBreakL2&&(r=this.params.tipLabelFontSizeL2),n.length<this.params.tipLabelBreakL3&&(r=this.params.tipLabelFontSizeL3);var o=0;n.forEach(function(e){o<e.n.strain.length&&(o=.65*e.n.strain.length*r)}),t.right+=o}this.setScales(t);var i=1e6,a=0,s=1e6,l=0;if(this.nodes.filter(function(e){return e.inView}).forEach(function(e){e.x>l&&(l=e.x),e.y>a&&(a=e.y),e.x<s&&(s=e.x),e.y<i&&(i=e.y)}),s===l&&(s-=.005,l+=.005),n.length<30){var c=.05*(a-i);i-=c,a+=c}if("radial"===this.layout||"unrooted"===this.layout){var u=l-s,p=a-i,h=Object(Z.d)([p,u]),d=u>p?.5*(u-p):0,f=u<p?.5*(p-u):0;this.xScale.domain([s-f,s+h-f]),this.yScale.domain([i-d,i+h-d])}else"clock"===this.layout?(this.xScale.domain([s,l]),this.yScale.domain([a,i])):(this.xScale.domain([s,l]),this.yScale.domain([i,a]));if(this.nodes.forEach(function(t){t.xTip=e.xScale(t.x),t.yTip=e.yScale(t.y),t.xBase=e.xScale(t.px),t.yBase=e.yScale(t.py)}),this.vaccines&&this.vaccines.forEach(function(t){var n=e.xScale(t.xCross),r=e.yScale(t.yCross);t.vaccineCross=" M ".concat(n-6,",").concat(r-6," L ").concat(n+6,",").concat(r+6," M ").concat(n-6,",").concat(r+6," L ").concat(n+6,",").concat(r-6)}),"clock"===this.layout||"unrooted"===this.layout)this.nodes.forEach(function(e){e.branch=[" M "+e.xBase.toString()+","+e.yBase.toString()+" L "+e.xTip.toString()+","+e.yTip.toString(),""]});else if("rect"===this.layout)this.nodes.forEach(function(t){var n=.5*(t.parent["stroke-width"]-t["stroke-width"])||0,r=[e.yScale(t.yRange[0]),e.yScale(t.yRange[1])];t.branch=[" M ".concat(t.xBase-n,",").concat(t.yBase," L ").concat(t.xTip,",").concat(t.yTip," M ").concat(t.xTip,",").concat(r[0]," L ").concat(t.xTip,",").concat(r[1])],e.params.confidence&&(t.confLine=" M ".concat(e.xScale(t.conf[0]),",").concat(t.yBase," L ").concat(e.xScale(t.conf[1]),",").concat(t.yTip))});else if("radial"===this.layout){var m=this.nodes[0].depth,y=this.nodes.map(function(e){return.5*(e.parent["stroke-width"]-e["stroke-width"])||0});this.nodes.forEach(function(t){t.cBarStart=e.yScale(t.yRange[0])}),this.nodes.forEach(function(t){t.cBarEnd=e.yScale(t.yRange[1])}),this.nodes.forEach(function(t,n){t.branch=[" M "+(t.xBase-y[n]*Math.sin(t.angle)).toString()+" "+(t.yBase-y[n]*Math.cos(t.angle)).toString()+" L "+t.xTip.toString()+" "+t.yTip.toString(),""],t.terminal||(t.branch[1]=[" M "+e.xScale(t.xCBarStart).toString()+" "+e.yScale(t.yCBarStart).toString()+" A "+(e.xScale(t.depth)-e.xScale(m)).toString()+" "+(e.yScale(t.depth)-e.yScale(m)).toString()+" 0 "+(t.smallBigArc?"1 ":"0 ")+" 1 "+e.xScale(t.xCBarEnd).toString()+","+e.yScale(t.yCBarEnd).toString()])})}},re.prototype.removeConfidence=function(e){this.confidencesInSVG=!1,"confidenceIntervals"in this.groups&&(e?this.groups.confidenceIntervals.selectAll("*").transition().duration(e).style("opacity",0).remove():this.groups.confidenceIntervals.selectAll("*").remove())},re.prototype.drawConfidence=function(e){var t=this;this.confidencesInSVG=!0,"confidenceIntervals"in this.groups||(this.groups.confidenceIntervals=this.svg.append("g").attr("id","confidenceIntervals")),e?(this.groups.confidenceIntervals.selectAll(".conf").data(this.nodes).enter().call(function(e){return t.drawSingleCI(e,0)}),this.groups.confidenceIntervals.transition().duration(e).style("opacity",.5)):this.groups.confidenceIntervals.selectAll(".conf").data(this.nodes).enter().call(function(e){return t.drawSingleCI(e,.5)})},re.prototype.drawSingleCI=function(e,t){e.append("path").attr("class","conf").attr("id",function(e){return"conf_"+e.n.clade}).attr("d",function(e){return e.confLine}).style("stroke",function(e){return e.branchStroke||"#888"}).style("opacity",t).style("fill","none").style("stroke-width",q).style("pointer-events","none")},re.prototype.drawBranchLabels=function(e){var t=this;this.params.branchLabelKey=e;var n=ee(e),r=te(e),o=ne(e,this.layout,this.zoomNode.n.tipCount);"branchLabels"in this.groups||(this.groups.branchLabels=this.svg.append("g").attr("id","branchLabels")),this.groups.branchLabels.selectAll(".branchLabel").data(this.nodes.filter(function(t){return t.n.attr.labels&&t.n.attr.labels[e]})).enter().append("text").attr("class","branchLabel").attr("x",function(e){return e.xTip+(t.params.orientation[0]>0?-5:5)}).attr("y",function(e){return e.yTip-t.params.branchLabelPadY}).style("text-anchor",this.params.orientation[0]>0?"end":"start").style("visibility",o).style("fill",this.params.branchLabelFill).style("font-family",this.params.branchLabelFont).style("font-weight",r).style("font-size",n).text(function(t){return t.n.attr.labels[e]})},re.prototype.removeBranchLabels=function(){"branchLabels"in this.groups&&this.groups.branchLabels.selectAll("*").remove()},re.prototype.updateBranchLabels=function(e){var t=this,n=ne(this.params.branchLabelKey,this.layout,this.zoomNode.n.tipCount),r=ee(this.params.branchLabelKey),o=te(this.params.branchLabelKey);this.groups.branchLabels.selectAll(".branchLabel").transition().duration(e).attr("x",function(e){return e.xTip-5}).attr("y",function(e){return e.yTip-t.params.branchLabelPadY}).style("visibility",n).style("font-weight",o).style("font-size",r),e||Object(H.d)()},re.prototype.updateTipLabels=function(e){var t=this;"tipLabels"in this.groups?this.groups.tipLabels.selectAll("*").remove():this.groups.tipLabels=this.svg.append("g").attr("id","tipLabels");var n=this.callbacks.tipLabel,r=this.params.tipLabelPadX,o=this.params.tipLabelPadY,i=this.nodes.filter(function(e){return e.terminal}).filter(function(e){return e.inView});if(i.length<this.params.tipLabelBreakL1){var a=this.params.tipLabelFontSizeL1;i.length<this.params.tipLabelBreakL2&&(a=this.params.tipLabelFontSizeL2),i.length<this.params.tipLabelBreakL3&&(a=this.params.tipLabelFontSizeL3),window.setTimeout(function(){t.groups.tipLabels.selectAll(".tipLabel").data(i).enter().append("text").attr("x",function(e){return e.xTip+r}).attr("y",function(e){return e.yTip+o}).text(function(e){return n(e)}).attr("class","tipLabel").style("font-size",a.toString()+"px").style("visibility",function(e){return e.visibility===b.NODE_VISIBLE?"visible":"hidden"})},e)}},re.prototype.hideGrid=function(){"majorGrid"in this.groups&&this.groups.majorGrid.selectAll("*").style("visibility","hidden"),"minorGrid"in this.groups&&this.groups.minorGrid.selectAll("*").style("visibility","hidden"),"gridText"in this.groups&&this.groups.gridText.selectAll("*").style("visibility","hidden")},re.prototype.addGrid=function(){var e,t,n=this.layout;if(e=this.groups,t=this.svg,"temporalWindow"in e||(e.temporalWindow=t.append("g").attr("id","temporalWindow")),"majorGrid"in e||(e.majorGrid=t.append("g").attr("id","majorGrid")),"minorGrid"in e||(e.minorGrid=t.append("g").attr("id","minorGrid")),"gridText"in e||(e.gridText=t.append("g").attr("id","gridText")),"unrooted"!==n){for(var r=Object(Z.f)(this.yScale.domain()),o=Object(Z.d)(this.yScale.domain()),i="radial"===n?this.nodes[0].depth:this.xScale.domain()[0],a="radial"===n?i+Object(Z.d)([this.xScale.domain()[1],this.yScale.domain()[1],-this.xScale.domain()[0],-this.yScale.domain()[0]]):this.xScale.domain()[1],s=$(a-i),l=[],c=[],u=Math.floor(i/s)*s,p="radial"===n?i:u,h=a,d=0;d<=(a-u)/s+3;d++){var f=u+s*d;l.push([f,f<p||f>h?"hidden":"visible","x"])}var m="num_date"===this.distanceMeasure?this.params.minorTicksTimeTree:this.params.minorTicks;5!==s&&10!==s||(m=5);for(var y=s/m,b=0;b<=(a-u)/y+30;b++){var g=u+y*b;c.push([g,g<p||g>h+y?"hidden":"visible","x"])}var v=function(e,t,n){return function(r){var o="";if("x"===r[2]){if("rect"===n||"clock"===n){var s=e(r[0]);o="M"+s.toString()+" "+t.range(