apr144-bam
Version:
Parser for BAM and BAM index (bai) files
27 lines • 807 B
JavaScript
export default {
// the read is paired in sequencing, no matter whether it is mapped in a pair
BAM_FPAIRED: 1,
// the read is mapped in a proper pair
BAM_FPROPER_PAIR: 2,
// the read itself is unmapped; conflictive with BAM_FPROPER_PAIR
BAM_FUNMAP: 4,
// the mate is unmapped
BAM_FMUNMAP: 8,
// the read is mapped to the reverse strand
BAM_FREVERSE: 16,
// the mate is mapped to the reverse strand
BAM_FMREVERSE: 32,
// this is read1
BAM_FREAD1: 64,
// this is read2
BAM_FREAD2: 128,
// not primary alignment
BAM_FSECONDARY: 256,
// QC failure
BAM_FQCFAIL: 512,
// optical or PCR duplicate
BAM_FDUP: 1024,
// supplementary alignment
BAM_FSUPPLEMENTARY: 2048,
};
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