alignment.js/SVGAlignment.js

A suite of reusable [React](http://reactjs.org/) components for creating a variety of visualizations involving [multiple sequence alignments](https://en.wikipedia.org/wiki/Multiple_sequence_alignment). [View the live demo here](http://alignment.hyphy.org/

"use strict";

Object.defineProperty(exports, "__esModule", {
  value: true
});
exports["default"] = void 0;

var _react = _interopRequireDefault(require("react"));

var _BaseSVGAlignment = _interopRequireDefault(require("./components/BaseSVGAlignment.js"));

var _SVGSiteAxis = _interopRequireDefault(require("./components/SVGSiteAxis.js"));

var _SequenceAxis = require("./components/SequenceAxis.js");

var _computeLabelWidth = _interopRequireDefault(require("./helpers/computeLabelWidth"));

function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { "default": obj }; }

function _extends() { _extends = Object.assign || function (target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i]; for (var key in source) { if (Object.prototype.hasOwnProperty.call(source, key)) { target[key] = source[key]; } } } return target; }; return _extends.apply(this, arguments); }

function SVGAlignment(props) {
  var sequence_data = props.sequence_data,
      label_padding = props.label_padding,
      site_size = props.site_size;

  if (!sequence_data) {
    return /*#__PURE__*/_react["default"].createElement("svg", null);
  }

  var number_of_sites = sequence_data.number_of_sites,
      number_of_sequences = sequence_data.number_of_sequences,
      label_width = (0, _computeLabelWidth["default"])(sequence_data, label_padding),
      width = label_width + site_size * number_of_sites,
      height = props.axis_height + site_size * number_of_sequences;
  return /*#__PURE__*/_react["default"].createElement("svg", {
    id: "alignment-js-svg",
    style: {
      width: width,
      height: height
    }
  }, /*#__PURE__*/_react["default"].createElement("rect", {
    x: 0,
    y: 0,
    width: width,
    height: height,
    fill: "white"
  }), /*#__PURE__*/_react["default"].createElement(_SVGSiteAxis["default"], _extends({}, props, {
    number_of_sites: number_of_sites,
    translateX: label_width,
    translateY: props.axis_height
  })), /*#__PURE__*/_react["default"].createElement(_SequenceAxis.BaseSequenceAxis, _extends({}, props, {
    width: label_width,
    translateY: props.axis_height
  })), /*#__PURE__*/_react["default"].createElement(_BaseSVGAlignment["default"], _extends({}, props, {
    translateX: label_width,
    translateY: props.axis_height
  })));
}

SVGAlignment.defaultProps = {
  label_padding: 10,
  site_size: 20,
  axis_height: 25
};
var _default = SVGAlignment;
exports["default"] = _default;