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Cognitive architecture for AI-augmented software development with structured memory, ensemble validation, and closed-loop correction. FAIR-aligned artifacts, 84% cost reduction via human-in-the-loop, standards adopted by 100+ organizations.
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{
"framework": "research-complete",
"version": "1.0.0",
"description": "Complete research framework with 8 specialized agents for literature review, source management, and knowledge synthesis",
"agents": [
{
"id": "research-discovery-agent",
"name": "Discovery Agent",
"file": "discovery-agent.md",
"description": "Search and discover research papers across multiple academic databases",
"stage": "discovery",
"capabilities": [
"multi_database_search",
"query_translation",
"result_ranking",
"deduplication"
],
"tools": ["Bash", "Glob", "Grep", "Read", "WebFetch", "Write"],
"model": "sonnet"
},
{
"id": "research-acquisition-agent",
"name": "Acquisition Agent",
"file": "acquisition-agent.md",
"description": "Download and organize research papers with metadata extraction",
"stage": "acquisition",
"capabilities": [
"pdf_download",
"metadata_extraction",
"doi_resolution",
"local_storage"
],
"tools": ["Bash", "Glob", "Grep", "Read", "WebFetch", "Write"],
"model": "sonnet"
},
{
"id": "research-documentation-agent",
"name": "Documentation Agent",
"file": "documentation-agent.md",
"description": "Generate summaries, extract key findings, and create literature notes",
"stage": "documentation",
"capabilities": [
"paper_summarization",
"key_findings_extraction",
"literature_notes",
"concept_mapping"
],
"tools": ["Bash", "Glob", "Grep", "Read", "WebFetch", "Write"],
"model": "sonnet"
},
{
"id": "research-citation-agent",
"name": "Citation Agent",
"file": "citation-agent.md",
"description": "Format citations in 9,000+ styles, build citation networks, and manage bibliographies",
"stage": "integration",
"capabilities": [
"citation_formatting",
"claims_backing",
"bibliography_management",
"citation_networks",
"bibtex_export"
],
"tools": ["Bash", "Glob", "Grep", "Read", "WebFetch", "Write"],
"model": "sonnet"
},
{
"id": "research-quality-agent",
"name": "Quality Agent",
"file": "quality-agent.md",
"description": "Assess source quality using GRADE framework and validate FAIR compliance",
"stage": "quality_assessment",
"capabilities": [
"multi_dimensional_scoring",
"grade_assessment",
"fair_validation",
"quality_reporting",
"quality_gates"
],
"tools": ["Bash", "Glob", "Grep", "Read", "WebFetch", "Write"],
"model": "sonnet"
},
{
"id": "research-archival-agent",
"name": "Archival Agent",
"file": "archival-agent.md",
"description": "Package research artifacts following OAIS standards with integrity verification",
"stage": "archival",
"capabilities": [
"sip_creation",
"aip_generation",
"dip_production",
"checksum_verification",
"remote_backup"
],
"tools": ["Bash", "Glob", "Grep", "Read", "Write"],
"model": "sonnet"
},
{
"id": "research-provenance-agent",
"name": "Provenance Agent",
"file": "provenance-agent.md",
"description": "Track research operations with W3C PROV compliance and enable reproducibility",
"stage": "cross_cutting",
"capabilities": [
"w3c_prov_logging",
"lineage_tracking",
"integrity_verification",
"reproducibility_packages",
"time_travel_queries"
],
"tools": ["Bash", "Glob", "Grep", "Read", "Write"],
"model": "sonnet"
},
{
"id": "research-workflow-agent",
"name": "Workflow Agent",
"file": "workflow-agent.md",
"description": "Orchestrate multi-stage research pipelines with DAG-based task dependencies",
"stage": "orchestration",
"capabilities": [
"dag_construction",
"stage_orchestration",
"parallel_execution",
"progress_tracking",
"failure_recovery"
],
"tools": ["Bash", "Glob", "Grep", "Read", "Task", "Write"],
"model": "sonnet"
}
],
"workflow_stages": [
{
"stage": "discovery",
"agents": ["research-discovery-agent"],
"description": "Search for and identify relevant research papers"
},
{
"stage": "acquisition",
"agents": ["research-acquisition-agent"],
"description": "Download and organize discovered papers"
},
{
"stage": "documentation",
"agents": ["research-documentation-agent"],
"description": "Generate summaries and extract key findings"
},
{
"stage": "quality_assessment",
"agents": ["research-quality-agent"],
"description": "Assess source quality and validate FAIR compliance"
},
{
"stage": "integration",
"agents": ["research-citation-agent"],
"description": "Format citations, back claims, generate bibliography"
},
{
"stage": "archival",
"agents": ["research-archival-agent"],
"description": "Package artifacts with integrity verification and backup"
},
{
"stage": "orchestration",
"agents": ["research-workflow-agent"],
"description": "Coordinate multi-stage research workflows"
},
{
"stage": "cross_cutting",
"agents": ["research-provenance-agent"],
"description": "Track provenance across all research operations"
}
],
"metadata": {
"created": "2026-02-03",
"last_updated": "2026-02-03",
"version": "1.0.0",
"total_agents": 8,
"status": "active"
}
}