@wikipathways/gpml
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Schemas and test cases for GPML XML file format.
186 lines • 10.7 kB
text/xml
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="test case" Version="20130813">
<Graphics BoardHeight="4804.444482440042" BoardWidth="1678.6187845303864" />
<GraphicalLine GraphId="id3b9f67a">
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<Point X="1521.1722674598261" Y="4400.0" />
</Graphics>
</GraphicalLine>
<GraphicalLine GraphId="cbe54">
<Graphics Color="cccccc" LineStyle="Broken" LineThickness="1.0" ZOrder="-21">
<Point X="43.39448905987598" Y="3800.0" />
<Point X="1521.1722668376533" Y="3800.0" />
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</GraphicalLine>
<GraphicalLine GraphId="bd26b">
<Graphics Color="cccccc" LineStyle="Broken" LineThickness="1.0" ZOrder="-20">
<Point X="43.3945147731131" Y="300.0" />
<Point X="1521.172292550891" Y="297.1794871794882" />
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</GraphicalLine>
<GraphicalLine GraphId="fbba0">
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<GraphicalLine GraphId="ea535">
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<GraphicalLine GraphId="bb9f7">
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<GraphicalLine GraphId="c3d22">
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<Point X="43.39453860038884" Y="2400.0" />
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</GraphicalLine>
<GraphicalLine GraphId="d0ad7">
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<Point X="43.394511341441" Y="2300.0" />
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</GraphicalLine>
<GraphicalLine GraphId="d3372">
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</GraphicalLine>
<GraphicalLine GraphId="c87b5">
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<Point X="43.394521879493624" Y="1600.0" />
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</GraphicalLine>
<GraphicalLine GraphId="c70e2">
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<Point X="43.394485326838975" Y="1000.0" />
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</GraphicalLine>
<GraphicalLine GraphId="eca55">
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<Point X="43.39454759273079" Y="900.0" />
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</GraphicalLine>
<GraphicalLine GraphId="id41348e99">
<Graphics Color="cccccc" LineStyle="Broken" LineThickness="1.0" ZOrder="-9">
<Point X="700.0" Y="185.55559355115136" />
<Point X="700.0" Y="4774.444482440042" />
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</GraphicalLine>
<GraphicalLine GraphId="fa68f">
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<Point X="100.0" Y="185.556" />
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</GraphicalLine>
<GraphicalLine GraphId="ca2cc">
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<Point X="900.0" Y="185.5556247347877" />
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</GraphicalLine>
<GraphicalLine GraphId="ea33b">
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<Point X="1500.0" Y="185.55555555555554" />
<Point X="1501.794871794869" Y="4774.444444444444" />
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</GraphicalLine>
<Label GraphId="bb5ba" TextLabel="PathVisio-Java has some bugs with displaying CenterX and CenterY values, as seen in this file. The dashed lines represent the bounding boxes as per the values set in the PathVisio-Java Properties panel and as written to GPML. The solid lines represent the bounding boxes as actually displayed in PathVisio-Java.">
<Graphics Align="Left" CenterX="842.7399200602425" CenterY="108.05084745762713" FillColor="ffffff" FontSize="16" Height="170.90395480225988" Width="444.46366270437375" ZOrder="33000" />
</Label>
<Shape GraphId="debe1">
<Graphics CenterX="1367.1333455368435" CenterY="1298.8048628466654" FontSize="10" Height="521.4192495028547" Rotation="0.0" ShapeType="Rectangle" Valign="Middle" Width="562.9708779870859" ZOrder="16384" />
</Shape>
<Shape GraphId="ba4c6">
<Graphics CenterX="400.0" CenterY="600.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="Rectangle" Valign="Middle" Width="600.0" ZOrder="32969" />
</Shape>
<Shape GraphId="ad9d9">
<Graphics CenterX="400.0" CenterY="3400.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="Oval" Valign="Middle" Width="600.0" ZOrder="32979" />
</Shape>
<Shape GraphId="ec998">
<Graphics CenterX="400.0" CenterY="1300.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="Arc" Valign="Middle" Width="600.0" ZOrder="32981" />
</Shape>
<Shape GraphId="ae3aa">
<Graphics CenterX="1200.0" CenterY="1300.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="Triangle" Valign="Middle" Width="600.0" ZOrder="32983" />
</Shape>
<Shape GraphId="eafdf">
<Graphics CenterX="400.0" CenterY="4100.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="Pentagon" Valign="Middle" Width="600.0" ZOrder="32985" />
</Shape>
<Shape GraphId="c3aac">
<Graphics CenterX="400.0" CenterY="2000.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="Hexagon" Valign="Middle" Width="600.0" ZOrder="32987" />
</Shape>
<Shape GraphId="fae6b">
<Graphics CenterX="1200.0" CenterY="2000.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="Brace" Valign="Middle" Width="600.0" ZOrder="32989" />
</Shape>
<Shape GraphId="ffa32">
<Attribute Key="org.pathvisio.CellularComponentProperty" Value="Mitochondria" />
<Graphics CenterX="1200.0" CenterY="3400.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="Mitochondria" Valign="Middle" Width="600.0" ZOrder="32991" />
</Shape>
<Shape GraphId="a5963">
<Attribute Key="org.pathvisio.CellularComponentProperty" Value="Sarcoplasmic Reticulum" />
<Graphics CenterX="400.0" CenterY="2700.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="Sarcoplasmic Reticulum" Valign="Middle" Width="600.0" ZOrder="32993" />
</Shape>
<Shape GraphId="f2f16">
<Attribute Key="org.pathvisio.CellularComponentProperty" Value="Endoplasmic Reticulum" />
<Graphics CenterX="1200.0" CenterY="2700.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="Endoplasmic Reticulum" Valign="Middle" Width="600.0" ZOrder="32995" />
</Shape>
<Shape GraphId="d8736">
<Attribute Key="org.pathvisio.CellularComponentProperty" Value="Golgi Apparatus" />
<Graphics CenterX="1200.0" CenterY="4100.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="Golgi Apparatus" Valign="Middle" Width="600.0" ZOrder="32997" />
</Shape>
<Shape GraphId="c6ccb">
<Graphics CenterX="1200.0" CenterY="600.0" Color="ff0000" FontSize="10" Height="600.0" Rotation="0.0" ShapeType="RoundedRectangle" Valign="Middle" Width="600.0" ZOrder="32999" />
</Shape>
<Shape GraphId="f5713">
<Graphics CenterX="399.99174762581754" CenterY="1450.3089325572964" FontSize="10" Height="300.6788711597367" Rotation="0.0" ShapeType="Rectangle" Valign="Middle" Width="599.8140755985673" ZOrder="33001" />
</Shape>
<Shape GraphId="b505f">
<Graphics CenterX="399.98338124107164" CenterY="2000.2031981344262" FontSize="10" Height="520.0372916892217" Rotation="0.0" ShapeType="Rectangle" Valign="Middle" Width="598.6046660892854" ZOrder="33002" />
</Shape>
<Shape GraphId="c43a3">
<Graphics CenterX="1199.9999999999998" CenterY="1999.702073955989" FontSize="10" Height="599.5541854213554" Rotation="0.0" ShapeType="Rectangle" Valign="Middle" Width="600.0" ZOrder="33003" />
</Shape>
<Shape GraphId="be35d">
<Graphics CenterX="426.1333333333334" CenterY="2689.0666666666666" FontSize="10" Height="562.1333333333334" Rotation="0.0" ShapeType="Rectangle" Valign="Middle" Width="455.4666666666666" ZOrder="33004" />
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<Shape GraphId="db8d7">
<Graphics CenterX="1218.7074829931973" CenterY="2714.2857142857147" FontSize="10" Height="578.2312925170071" Rotation="0.0" ShapeType="Rectangle" Valign="Middle" Width="553.0612244897957" ZOrder="33005" />
</Shape>
<Shape GraphId="b68ac">
<Graphics CenterX="399.7785160575859" CenterY="3399.778516057586" FontSize="10" Height="602.4363233665558" Rotation="0.0" ShapeType="Rectangle" Valign="Middle" Width="600.2214839424141" ZOrder="33006" />
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<Shape GraphId="e7b76">
<Graphics CenterX="1198.2281284606865" CenterY="3399.22480620155" FontSize="10" Height="599.1140642303429" Rotation="0.0" ShapeType="Rectangle" Valign="Middle" Width="593.5769656699892" ZOrder="33007" />
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<Shape GraphId="ff5a5">
<Graphics CenterX="428.48837209302326" CenterY="4100.0" FontSize="10" Height="572.0930232558147" Rotation="0.0" ShapeType="Rectangle" Valign="Middle" Width="543.0232558139535" ZOrder="33008" />
</Shape>
<Shape GraphId="b32c8">
<Graphics CenterX="1213.372093023256" CenterY="4102.325581395348" FontSize="10" Height="539.5348837209306" Rotation="0.0" ShapeType="Rectangle" Valign="Middle" Width="503.48837209302366" ZOrder="33009" />
</Shape>
<Group GroupId="df545" Style="Group" />
<Group GroupId="aa286" Style="Group" />
<Group GroupId="c0ad5" Style="Group" />
<Group GroupId="b6a2e" Style="Group" />
<Group GroupId="b712f" Style="Group" />
<Group GroupId="ca89d" Style="Group" />
<Group GroupId="db199" Style="Group" />
<Group GroupId="cda4c" Style="Group" />
<Group GroupId="f4675" Style="Group" />
<Group GroupId="f0744" Style="Group" />
<Group GroupId="d4e31" Style="Group" />
<InfoBox CenterX="0.0" CenterY="0.0" />
<Biopax />
</Pathway>