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@stdlib/stats

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Standard library statistical functions.

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/** * @license Apache-2.0 * * Copyright (c) 2018 The Stdlib Authors. * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */ /* eslint-disable no-restricted-syntax, no-invalid-this */ 'use strict'; // MODULES // var defineProperty = require( '@stdlib/utils/define-property' ); var setReadOnly = require( '@stdlib/utils/define-nonenumerable-read-only-property' ); var setReadOnlyAccessor = require( '@stdlib/utils/define-nonenumerable-read-only-accessor' ); var isPositive = require( '@stdlib/assert/is-positive-number' ).isPrimitive; var entropy = require( './../../../../../base/dists/gamma/entropy' ); var kurtosis = require( './../../../../../base/dists/gamma/kurtosis' ); var mean = require( './../../../../../base/dists/gamma/mean' ); var mode = require( './../../../../../base/dists/gamma/mode' ); var quantile = require( './../../../../../base/dists/gamma/quantile' ); var skewness = require( './../../../../../base/dists/gamma/skewness' ); var stdev = require( './../../../../../base/dists/gamma/stdev' ); var variance = require( './../../../../../base/dists/gamma/variance' ); var cdf = require( './../../../../../base/dists/gamma/cdf' ); var logcdf = require( './../../../../../base/dists/gamma/logcdf' ); var logpdf = require( './../../../../../base/dists/gamma/logpdf' ); var mgf = require( './../../../../../base/dists/gamma/mgf' ); var pdf = require( './../../../../../base/dists/gamma/pdf' ); var format = require( '@stdlib/string/format' ); // FUNCTIONS // /** * Evaluates the cumulative distribution function (CDF). * * @private * @param {number} x - input value * @returns {number} evaluated CDF */ function gammaCDF( x ) { return cdf( x, this.alpha, this.beta ); } /** * Evaluates the natural logarithm of the cumulative distribution function (logCDF). * * @private * @param {number} x - input value * @returns {number} evaluated logCDF */ function gammaLogCDF( x ) { return logcdf( x, this.alpha, this.beta ); } /** * Evaluates the natural logarithm of the probability density function (logPDF). * * @private * @param {number} x - input value * @returns {number} evaluated logPDF */ function gammaLogPDF( x ) { return logpdf( x, this.alpha, this.beta ); } /** * Evaluates the moment-generating function (MGF). * * @private * @param {number} t - input value * @returns {number} evaluated MGF */ function gammaMGF( t ) { return mgf( t, this.alpha, this.beta ); } /** * Evaluates the probability density function (PDF). * * @private * @param {number} x - input value * @returns {number} evaluated PDF */ function gammaPDF( x ) { return pdf( x, this.alpha, this.beta ); } /** * Evaluates the quantile function. * * @private * @param {Probability} p - input probability * @returns {number} evaluated quantile function */ function gammaQuantile( p ) { return quantile( p, this.alpha, this.beta ); } // MAIN // /** * Gamma distribution constructor. * * @constructor * @param {PositiveNumber} [alpha=1.0] - shape parameter * @param {PositiveNumber} [beta=1.0] - rate parameter * @throws {TypeError} `alpha` must be a positive number * @throws {TypeError} `beta` must be a positive number * @returns {Gamma} distribution instance * * @example * var gamma = new Gamma( 1.0, 1.0 ); * * var y = gamma.cdf( 0.8 ); * // returns ~0.551 * * var v = gamma.mode; * // returns 0.0 */ function Gamma() { var alpha; var beta; if ( !(this instanceof Gamma) ) { if ( arguments.length === 0 ) { return new Gamma(); } return new Gamma( arguments[ 0 ], arguments[ 1 ] ); } if ( arguments.length ) { alpha = arguments[ 0 ]; beta = arguments[ 1 ]; if ( !isPositive( alpha ) ) { throw new TypeError( format( 'invalid argument. Shape parameter must be a positive number. Value: `%s`.', alpha ) ); } if ( !isPositive( beta ) ) { throw new TypeError( format( 'invalid argument. Rate parameter must be a positive number. Value: `%s`.', beta ) ); } } else { alpha = 1.0; beta = 1.0; } defineProperty( this, 'alpha', { 'configurable': false, 'enumerable': true, 'get': function get() { return alpha; }, 'set': function set( value ) { if ( !isPositive( value ) ) { throw new TypeError( format( 'invalid assignment. Must be a positive number. Value: `%s`.', value ) ); } alpha = value; } }); defineProperty( this, 'beta', { 'configurable': false, 'enumerable': true, 'get': function get() { return beta; }, 'set': function set( value ) { if ( !isPositive( value ) ) { throw new TypeError( format( 'invalid assignment. Must be a positive number. Value: `%s`.', value ) ); } beta = value; } }); return this; } /** * Gamma distribution differential entropy. * * @name entropy * @memberof Gamma.prototype * @type {number} * @see [differential entropy]{@link https://en.wikipedia.org/wiki/Entropy_%28information_theory%29} * * @example * var gamma = new Gamma( 4.0, 12.0 ); * * var v = gamma.entropy; * // returns ~-0.462 */ setReadOnlyAccessor( Gamma.prototype, 'entropy', function get() { return entropy( this.alpha, this.beta ); }); /** * Gamma distribution excess kurtosis. * * @name kurtosis * @memberof Gamma.prototype * @type {number} * @see [kurtosis]{@link https://en.wikipedia.org/wiki/Kurtosis} * * @example * var gamma = new Gamma( 4.0, 12.0 ); * * var v = gamma.kurtosis; * // returns 1.5 */ setReadOnlyAccessor( Gamma.prototype, 'kurtosis', function get() { return kurtosis( this.alpha, this.beta ); }); /** * Gamma distribution expected value. * * @name mean * @memberof Gamma.prototype * @type {number} * @see [expected value]{@link https://en.wikipedia.org/wiki/Expected_value} * * @example * var gamma = new Gamma( 4.0, 12.0 ); * * var v = gamma.mean; * // returns ~0.333 */ setReadOnlyAccessor( Gamma.prototype, 'mean', function get() { return mean( this.alpha, this.beta ); }); /** * Gamma distribution mode. * * @name mode * @memberof Gamma.prototype * @type {number} * @see [mode]{@link https://en.wikipedia.org/wiki/Mode_%28statistics%29} * * @example * var gamma = new Gamma( 4.0, 12.0 ); * * var v = gamma.mode; * // returns 0.25 */ setReadOnlyAccessor( Gamma.prototype, 'mode', function get() { return mode( this.alpha, this.beta ); }); /** * Gamma distribution skewness. * * @name skewness * @memberof Gamma.prototype * @type {number} * @see [skewness]{@link https://en.wikipedia.org/wiki/Skewness} * * @example * var gamma = new Gamma( 4.0, 12.0 ); * * var v = gamma.skewness; * // returns 1.0 */ setReadOnlyAccessor( Gamma.prototype, 'skewness', function get() { return skewness( this.alpha, this.beta ); }); /** * Gamma distribution standard deviation. * * @name stdev * @memberof Gamma.prototype * @type {PositiveNumber} * @see [standard deviation]{@link https://en.wikipedia.org/wiki/Standard_deviation} * * @example * var gamma = new Gamma( 4.0, 12.0 ); * * var v = gamma.stdev; * // returns ~0.167 */ setReadOnlyAccessor( Gamma.prototype, 'stdev', function get() { return stdev( this.alpha, this.beta ); }); /** * Gamma distribution variance. * * @name variance * @memberof Gamma.prototype * @type {PositiveNumber} * @see [variance]{@link https://en.wikipedia.org/wiki/Variance} * * @example * var gamma = new Gamma( 4.0, 12.0 ); * * var v = gamma.variance; * // returns ~0.028 */ setReadOnlyAccessor( Gamma.prototype, 'variance', function get() { return variance( this.alpha, this.beta ); }); /** * Evaluates the cumulative distribution function (CDF). * * @name cdf * @memberof Gamma.prototype * @type {Function} * @param {number} x - input value * @returns {number} evaluated CDF * @see [cdf]{@link https://en.wikipedia.org/wiki/Cumulative_distribution_function} * * @example * var gamma = new Gamma( 2.0, 4.0 ); * * var v = gamma.cdf( 0.5 ); * // returns ~0.594 */ setReadOnly( Gamma.prototype, 'cdf', gammaCDF ); /** * Evaluates the natural logarithm of the cumulative distribution function (logCDF). * * @name logcdf * @memberof Gamma.prototype * @type {Function} * @param {number} x - input value * @returns {number} evaluated logCDF * @see [cdf]{@link https://en.wikipedia.org/wiki/Cumulative_distribution_function} * * @example * var gamma = new Gamma( 2.0, 4.0 ); * * var v = gamma.logcdf( 0.8 ); * // returns ~-0.188 */ setReadOnly( Gamma.prototype, 'logcdf', gammaLogCDF ); /** * Evaluates the natural logarithm of the probability density function (logPDF). * * @name logpdf * @memberof Gamma.prototype * @type {Function} * @param {number} x - input value * @returns {number} evaluated logPDF * @see [pdf]{@link https://en.wikipedia.org/wiki/Probability_density_function} * * @example * var gamma = new Gamma( 2.0, 4.0 ); * * var v = gamma.logpdf( 0.8 ); * // returns ~-0.651 */ setReadOnly( Gamma.prototype, 'logpdf', gammaLogPDF ); /** * Evaluates the moment-generating function (MGF). * * @name mgf * @memberof Gamma.prototype * @type {Function} * @param {number} t - input value * @returns {number} evaluated MGF * @see [mgf]{@link https://en.wikipedia.org/wiki/Moment-generating_function} * * @example * var gamma = new Gamma( 2.0, 4.0 ); * * var v = gamma.mgf( 0.5 ); * // returns ~1.306 */ setReadOnly( Gamma.prototype, 'mgf', gammaMGF ); /** * Evaluates the probability density function (PDF). * * @name pdf * @memberof Gamma.prototype * @type {Function} * @param {number} x - input value * @returns {number} evaluated PDF * @see [pdf]{@link https://en.wikipedia.org/wiki/Probability_density_function} * * @example * var gamma = new Gamma( 2.0, 4.0 ); * * var v = gamma.pdf( 0.8 ); * // returns ~0.522 */ setReadOnly( Gamma.prototype, 'pdf', gammaPDF ); /** * Evaluates the quantile function. * * @name quantile * @memberof Gamma.prototype * @type {Function} * @param {Probability} p - input probability * @returns {number} evaluated quantile function * @see [quantile function]{@link https://en.wikipedia.org/wiki/Quantile_function} * * @example * var gamma = new Gamma( 2.0, 4.0 ); * * var v = gamma.quantile( 0.5 ); * // returns ~0.42 */ setReadOnly( Gamma.prototype, 'quantile', gammaQuantile ); // EXPORTS // module.exports = Gamma;