@rcsb/rcsb-saguaro-app
Version:
RCSB 1D Saguaro Web App
72 lines (71 loc) • 3.97 kB
JavaScript
;
Object.defineProperty(exports, "__esModule", { value: true });
exports.SequenceTrackTitleFactory = void 0;
const tslib_1 = require("tslib");
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
const web_resources_json_1 = tslib_1.__importDefault(require("../../../../RcsbServerConfig/web.resources.json"));
const RcsbAnnotationConstants_1 = require("../../../../RcsbAnnotationConfig/RcsbAnnotationConstants");
const TrackUtils_1 = require("../TrackFactoryImpl/Helper/TrackUtils");
const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
var assertDefined = Assertions_1.Assertions.assertDefined;
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
class SequenceTrackTitleFactory {
constructor(entityInstanceTranslator) {
this.entityInstanceTranslator = undefined;
this.entityInstanceTranslator = entityInstanceTranslator;
}
getTrackTitle(alignmentQueryContext) {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
var _a, _b, _c;
let rowTitle;
if (!alignmentQueryContext.excludeFirstRowLink && alignmentQueryContext.from === GqlTypes_1.SequenceReference.Uniprot) {
rowTitle = {
visibleTex: (_a = alignmentQueryContext.queryId) !== null && _a !== void 0 ? _a : "",
url: web_resources_json_1.default.rcsb_uniprot.url + alignmentQueryContext.queryId,
style: {
fontWeight: "bold",
color: RcsbAnnotationConstants_1.RcsbAnnotationConstants.provenanceColorCode.rcsbLink
}
};
}
else if (!alignmentQueryContext.excludeFirstRowLink && alignmentQueryContext.from === GqlTypes_1.SequenceReference.PdbInstance && this.entityInstanceTranslator != null) {
rowTitle = {
visibleTex: alignmentQueryContext.queryId ? this.buildInstanceId(alignmentQueryContext.queryId) : "",
style: {
fontWeight: "bold",
}
};
}
else {
rowTitle = {
visibleTex: (_b = alignmentQueryContext.queryId) !== null && _b !== void 0 ? _b : ((_c = alignmentQueryContext.groupId) !== null && _c !== void 0 ? _c : ""),
style: {
fontWeight: "bold",
}
};
}
return rowTitle;
});
}
getTrackTitlePrefix(alignmentQueryContext) {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
var _a;
return (alignmentQueryContext.from && !alignmentQueryContext.from.includes("PDB")) ? alignmentQueryContext.from.replace("_", " ") + " " + TagDelimiter_1.TagDelimiter.sequenceTitle : ((_a = alignmentQueryContext.sequencePrefix) !== null && _a !== void 0 ? _a : "");
});
}
getTrackTitleFlagColor(alignmentQueryContext) {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
var _a;
const queryId = (_a = alignmentQueryContext.queryId) !== null && _a !== void 0 ? _a : alignmentQueryContext.groupId;
assertDefined(queryId), assertDefined(alignmentQueryContext.from);
return TrackUtils_1.TrackUtils.getProvenanceConfigFormTarget(queryId, alignmentQueryContext.from).color;
});
}
buildInstanceId(targetId) {
var _a;
const labelAsymId = targetId.split(TagDelimiter_1.TagDelimiter.instance)[1];
const authAsymId = (_a = this.entityInstanceTranslator) === null || _a === void 0 ? void 0 : _a.translateAsymToAuth(labelAsymId);
return (labelAsymId === authAsymId || !authAsymId ? labelAsymId : labelAsymId + "[auth " + authAsymId + "]");
}
}
exports.SequenceTrackTitleFactory = SequenceTrackTitleFactory;