@rcsb/rcsb-saguaro-app
Version:
RCSB 1D Saguaro Web App
82 lines (81 loc) • 4.84 kB
JavaScript
;
Object.defineProperty(exports, "__esModule", { value: true });
exports.ExperimentalAlignmentTrackTitleFactory = void 0;
const tslib_1 = require("tslib");
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
const web_resources_json_1 = tslib_1.__importDefault(require("../../../../RcsbServerConfig/web.resources.json"));
const RcsbAnnotationConstants_1 = require("../../../../RcsbAnnotationConfig/RcsbAnnotationConstants");
const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
var assertDefined = Assertions_1.Assertions.assertDefined;
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
class ExperimentalAlignmentTrackTitleFactory {
constructor(entityInstanceTranslator) {
this.entityInstanceTranslator = undefined;
this.entityInstanceTranslator = entityInstanceTranslator;
}
getTrackTitle(alignmentQueryContext, targetAlignment) {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
let rowTitle;
assertDefined(targetAlignment.target_id);
if (alignmentQueryContext.excludeAlignmentLinks) {
rowTitle = targetAlignment.target_id;
}
else if (alignmentQueryContext.to === GqlTypes_1.SequenceReference.PdbInstance && this.entityInstanceTranslator != null) {
const entityId = this.entityInstanceTranslator.translateAsymToEntity(TagDelimiter_1.TagDelimiter.parseInstance(targetAlignment.target_id).instanceId);
assertDefined(entityId);
rowTitle = {
visibleTex: this.buildInstanceId(targetAlignment.target_id),
url: web_resources_json_1.default.rcsb_entry.url + TagDelimiter_1.TagDelimiter.parseInstance(targetAlignment.target_id).entryId + "#entity-" + entityId,
style: {
fontWeight: "bold",
color: RcsbAnnotationConstants_1.RcsbAnnotationConstants.provenanceColorCode.rcsbLink
}
};
}
else if (alignmentQueryContext.to === GqlTypes_1.SequenceReference.PdbEntity) {
const entityId = TagDelimiter_1.TagDelimiter.parseEntity(targetAlignment.target_id).entityId;
rowTitle = {
visibleTex: targetAlignment.target_id,
url: web_resources_json_1.default.rcsb_entry.url + TagDelimiter_1.TagDelimiter.parseEntity(targetAlignment.target_id).entryId + "#entity-" + entityId,
style: {
fontWeight: "bold",
color: RcsbAnnotationConstants_1.RcsbAnnotationConstants.provenanceColorCode.rcsbLink
}
};
}
else if (alignmentQueryContext.to === GqlTypes_1.SequenceReference.Uniprot) {
rowTitle = {
visibleTex: targetAlignment.target_id,
url: web_resources_json_1.default.rcsb_uniprot.url + targetAlignment.target_id,
style: {
fontWeight: "bold",
color: RcsbAnnotationConstants_1.RcsbAnnotationConstants.provenanceColorCode.rcsbLink
}
};
}
else {
rowTitle = targetAlignment.target_id;
}
return rowTitle;
});
}
getTrackTitlePrefix(alignmentQueryContext, targetAlignment) {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
return alignmentQueryContext.to && !alignmentQueryContext.to.includes("PDB") ? alignmentQueryContext.to.replace("_", " ") + " " + TagDelimiter_1.TagDelimiter.alignmentTitle : "";
});
}
getTrackTitleFlagColor(alignmentQueryContext, targetAlignment) {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
if (alignmentQueryContext.to === GqlTypes_1.SequenceReference.Uniprot)
return RcsbAnnotationConstants_1.RcsbAnnotationConstants.provenanceColorCode.external;
return RcsbAnnotationConstants_1.RcsbAnnotationConstants.provenanceColorCode.rcsbPdb;
});
}
buildInstanceId(targetId) {
var _a;
const labelAsymId = TagDelimiter_1.TagDelimiter.parseInstance(targetId).instanceId;
const authAsymId = (_a = this.entityInstanceTranslator) === null || _a === void 0 ? void 0 : _a.translateAsymToAuth(labelAsymId);
return TagDelimiter_1.TagDelimiter.parseInstance(targetId).entryId + TagDelimiter_1.TagDelimiter.instance + (labelAsymId === authAsymId || !authAsymId ? labelAsymId : labelAsymId + "[auth " + authAsymId + "]");
}
}
exports.ExperimentalAlignmentTrackTitleFactory = ExperimentalAlignmentTrackTitleFactory;